SMTL ID : 6qlm.1 (1 other biounit)

Cathepsin-K in complex with MIV-701

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x HFH: ~{N}-[(2~{S})-1-[(3~{R},3~{a}~{R},6~{S},6~{a}~{S})-6-fluoranyl-3-oxidanyl-2,3,3~{a},5,6,6~{a}-hexahydrofuro[3,2-b]pyrrol-4-yl]-4-methyl-1-oxidanylidene-pentan-2-yl]-4-[2-(4-methylpiperazin-1-yl)-1,3-thiazol-4-yl]benzamide(Covalent)

HFH.1: 18 residues within 4Å: Chain A: Q.20, G.24, S.25, C.26, W.27, E.60, N.61, D.62, G.65, G.66, G.67, Y.68, M.69, A.135, L.161, N.162, H.163, L.210 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:A.135, A:L.210 Hydrogen bonds: A:Q.20, A:C.26, A:G.67, A:G.67 Water bridges: A:C.23 Salt bridges: A:D.62 pi-Stacking: A:Y.68 Halogen bonds: A:G.65

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Q.38, K.41, V.129, P.214, K.215, M.216 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:Q.38, A:K.41, A:K.41, A:P.214, A:M.216 Water bridges: A:K.41, A:R.109

1 x NA: SODIUM ION(Non-functional Binders)

NA.3: 2 residues within 4Å: Chain A: E.60, N.71 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.60

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Derbyshire, D.J., Successful development of 3-oxohexahydrofuropyrrole amino acid amides as inhibitors of Cathepsin-K. To Be Published

Release Date

2020-02-19

Peptides

Cathepsin K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cathepsin K

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