SMTL ID : 6qzv.2 (1 other biounit)

DPP9 bound to a dipeptide (MP) from the N-terminus of BRCA2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

homo-dimer

Ligands

2 x MET- PRO: MET-PRO(Non-covalent)

MET-PRO.1: 13 residues within 4Å: Chain A: R.162, E.277, E.278, H.529, Y.673, Q.677, S.759, Y.760, Y.791, Y.795, N.839, V.840, H.869 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:Y.760 Hydrogen bonds: A:R.162, A:Q.677, A:S.759, A:Y.791 Salt bridges: A:R.162, A:H.869 MET-PRO.2: 11 residues within 4Å: Chain B: R.162, E.277, E.278, H.529, Y.673, Q.677, S.759, Y.791, Y.795, N.839, H.869 10 PLIP interactions: 10 interactions with chain B Hydrophobic interactions: B:Y.795 Hydrogen bonds: B:R.162, B:E.277, B:Q.677, B:S.759, B:S.759, B:Y.791, B:N.839 Salt bridges: B:R.162, B:H.869

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Silva-Garcia, M. et al., Dipeptidyl peptidase 9 triggers BRCA2 degradation by the N-degron pathway to promote DNA-damage repair. Biorxiv (2020)

Release Date

2020-09-30

Peptides

Dipeptidyl peptidase 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

B
D

Dipeptidyl peptidase 9

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