SMTL ID : 7a3f.1 (1 other biounit)

Crystal structure of apo DPP9

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.90 Å

Oligo State

homo-dimer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 6 residues within 4Å: Chain A: Y.673, S.759, Y.760, V.785, Y.791, Y.795 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.673, A:Y.673, A:S.759, A:Y.760, A:Y.791 PO4.3: 5 residues within 4Å: Chain B: Y.673, S.759, Y.760, Y.791, Y.795 6 PLIP interactions: 6 interactions with chain B Hydrogen bonds: B:Y.673, B:Y.673, B:Y.673, B:S.759, B:Y.760, B:Y.791

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 6 residues within 4Å: Chain A: Y.442, E.443, N.474, K.509, I.512, E.515 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:Y.442, A:E.443, A:N.474, A:K.509, A:K.509 GOL.4: 6 residues within 4Å: Chain B: N.341, P.342, K.343, I.344, V.378, E.379 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:I.344, B:E.379

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Fehr, L. et al., Discovery and Development of 4-Oxo-beta-Lactams as Novel Inhibitors of Dipeptidyl Peptidases 8 and 9. To Be Published

Release Date

2021-06-30

Peptides

Dipeptidyl peptidase 9: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Dipeptidyl peptidase 9

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