SMTL ID : 6r0r.1

Getah virus macro domain in complex with ADPr covalently bond to Cys34

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.45 Å

Oligo State

monomer

Ligands

1 x JNT: [[(2~{R},3~{S},4~{R},5~{R})-5-(6-aminopurin-9-yl)-3,4-bis(oxidanyl)oxolan-2-yl]methoxy-oxidanyl-phosphoryl] [(2~{R},3~{S},4~{S})-2,3,4,5-tetrakis(oxidanyl)pentyl] hydrogen phosphate(Covalent)

JNT.1: 24 residues within 4Å: Chain A: A.11, D.12, I.13, N.23, A.24, A.25, N.26, T.30, S.32, D.33, G.34, V.35, C.36, A.38, L.110, L.111, S.112, T.113, G.114, T.115, F.116, C.145, R.146, W.150 18 PLIP interactions: 18 interactions with chain A Hydrogen bonds: A:D.12, A:D.12, A:I.13, A:N.23, A:N.26, A:N.26, A:S.32, A:D.33, A:V.35, A:C.36, A:S.112, A:T.113, A:G.114, A:T.115, A:T.115, A:F.116, A:R.146 Water bridges: A:L.110

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 5 residues within 4Å: Chain A: R.92, A.95, S.96, S.99, A.136 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.99, A:S.99

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferreira-Ramos, A.S. et al., Snapshots of ADP-ribose bound to Getah virus macro domain reveal an intriguing choreography. Sci Rep (2020)

Release Date

2020-04-01

Peptides

Non-structural polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural polyprotein

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