SMTL ID : 6r11.1 (2 other biounits)

Cereblon isoform 4 from Magnetospirillum gryphiswaldense in complex with compound 5b

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.75 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: C.25, C.28, C.91, C.94 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.25, A:C.28, A:C.91, A:C.94

1 x JOB: 5-azanyl-2-[(3~{S})-2,5-bis(oxidanylidene)pyrrolidin-3-yl]isoindole-1,3-dione(Non-covalent)

JOB.2: 10 residues within 4Å: Chain A: F.50, N.51, P.52, E.77, F.78, S.79, W.80, W.86, W.100, Y.102 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:W.80, A:W.86 Hydrogen bonds: A:N.51, A:F.78, A:W.80, A:Y.102

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.3: 4 residues within 4Å: Chain A: M.55, F.57, H.97, R.118 3 PLIP interactions: 3 interactions with chain A Water bridges: A:N.51 Salt bridges: A:H.97, A:R.118

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heim, C. et al., De-Novo Design of Cereblon (CRBN) Effectors Guided by Natural Hydrolysis Products of Thalidomide Derivatives. J.Med.Chem. (2019)

Release Date

2019-08-07

Peptides

Cereblon isoform 4: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cereblon isoform 4

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