SMTL ID : 6r1q.1

murine Neuroglobin under 2 kBar of argon

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 6 residues within 4Å: Chain A: R.16, S.17, P.18, L.19, E.20, R.64 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.17, A:L.19, A:E.20 Salt bridges: A:R.64

1 x HEM: PROTOPORPHYRIN IX CONTAINING FE(Non-covalent)

HEM.2: 18 residues within 4Å: Chain A: L.36, L.39, F.40, Y.42, H.62, K.65, V.66, V.69, Y.86, L.90, H.94, V.99, F.104, V.107 Ligands: AR.4, AR.8, AR.11, AR.15 26 PLIP interactions: 26 interactions with chain A, Hydrophobic interactions: A:L.36, A:L.39, A:F.40, A:F.40, A:F.40, A:Y.42, A:K.65, A:K.65, A:V.66, A:V.66, A:V.69, A:V.69, A:V.69, A:L.90, A:V.99, A:F.104, A:V.107, A:V.107 Hydrogen bonds: A:Y.42, A:Y.42 Water bridges: A:K.65, A:K.65 Salt bridges: A:H.62, A:K.65 Metal complexes: A:H.62, A:H.94

13 x AR: ARGON(Non-covalent)

AR.3: 6 residues within 4Å: Chain A: F.26, A.27, F.30, P.50, S.53, L.54 No protein-ligand interaction detected (PLIP) AR.4: 4 residues within 4Å: Chain A: L.25, F.26, V.107 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) AR.5: 4 residues within 4Å: Chain A: L.111, L.134, Y.135 Ligands: AR.8 No protein-ligand interaction detected (PLIP) AR.6: 6 residues within 4Å: Chain A: G.22, L.25, F.26, I.63, V.66, M.67 No protein-ligand interaction detected (PLIP) AR.7: 5 residues within 4Å: Chain A: L.25, V.66, I.70, V.107 Ligands: AR.8 No protein-ligand interaction detected (PLIP) AR.8: 6 residues within 4Å: Chain A: I.70, V.138 Ligands: HEM.2, AR.5, AR.7, AR.15 No protein-ligand interaction detected (PLIP) AR.9: 5 residues within 4Å: Chain A: G.108, L.112, W.131, S.132, Y.135 No protein-ligand interaction detected (PLIP) AR.10: 3 residues within 4Å: Chain A: K.65, L.68 Ligands: AR.12 No protein-ligand interaction detected (PLIP) AR.11: 4 residues within 4Å: Chain A: K.93, H.94, V.97 Ligands: HEM.2 No protein-ligand interaction detected (PLIP) AR.12: 2 residues within 4Å: Chain A: V.69 Ligands: AR.10 No protein-ligand interaction detected (PLIP) AR.13: 4 residues within 4Å: Chain A: L.80, L.87, A.137, V.138 No protein-ligand interaction detected (PLIP) AR.14: 3 residues within 4Å: Chain A: L.101, F.104, M.142 No protein-ligand interaction detected (PLIP) AR.15: 7 residues within 4Å: Chain A: F.104, Y.135, V.138, V.139, M.142 Ligands: HEM.2, AR.8 No protein-ligand interaction detected (PLIP)

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.16: 2 residues within 4Å: Chain A: R.12, R.16 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Prange, T. et al., Argon-labelling protein crystals by high pressure cooling at 2000 Bar. To Be Published

Release Date

2020-04-01

Peptides

Neuroglobin: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Neuroglobin

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