SMTL ID : 6r2u.1 (5 other biounits)

Zinc-alpha2-Glycoprotein with a Fluorescent Dansyl C 11 Fatty Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 2 residues within 4Å: Chain A: R.184, Q.185 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.185 SO4.2: 4 residues within 4Å: Chain A: E.62, D.63, W.64, K.65 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:D.63, A:W.64, A:K.65 Salt bridges: A:K.65 SO4.3: 3 residues within 4Å: Chain A: R.110, S.111, R.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.111 Salt bridges: A:R.110, A:R.172 SO4.4: 5 residues within 4Å: Chain A: H.21, P.26, A.27, S.44, K.45 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:A.27, A:S.44 Salt bridges: A:K.45

1 x 11D: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid(Non-covalent)

11D.5: 8 residues within 4Å: Chain A: V.191, T.193, K.205, L.207, Y.209, V.235, Q.244, W.246 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.191, A:V.191, A:Y.209, A:V.235 Hydrogen bonds: A:Q.244 Salt bridges: A:K.205

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, A.M. et al., Crystal structure of zinc-alpha 2-glycoprotein in complex with a fatty acid reveals multiple different modes of protein-lipid binding. Biochem.J. (2019)

Release Date

2019-09-18

Peptides

Zinc-alpha-2-glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Zinc-alpha-2-glycoprotein

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