SMTL ID : 6r2u.3 (5 other biounits)

Zinc-alpha2-Glycoprotein with a Fluorescent Dansyl C 11 Fatty Acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.49 Å

Oligo State

monomer

Ligands

1 x 11D: 11-({[5-(dimethylamino)naphthalen-1-yl]sulfonyl}amino)undecanoic acid(Non-covalent)

11D.1: 7 residues within 4Å: Chain A: R.74, I.77, F.78, W.116, Y.118, W.149, Y.155 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:I.77, A:W.116, A:W.149, A:W.149, A:Y.155 Hydrogen bonds: A:R.74, A:F.78, A:Y.118, A:Y.155 Salt bridges: A:R.74

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 5 residues within 4Å: Chain A: S.111, S.112, G.113, K.130, E.164 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.113 Salt bridges: A:K.130 SO4.3: 4 residues within 4Å: Chain A: N.109, R.110, S.111, R.172 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.111 Salt bridges: A:R.110, A:R.172 SO4.4: 5 residues within 4Å: Chain A: V.25, P.26, A.27, S.44, K.45 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.21, A:A.27, A:S.44, A:S.44

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, A.M. et al., Crystal structure of zinc-alpha 2-glycoprotein in complex with a fatty acid reveals multiple different modes of protein-lipid binding. Biochem.J. (2019)

Release Date

2019-09-18

Peptides

Zinc-alpha-2-glycoprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Zinc-alpha-2-glycoprotein

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