SMTL ID : 6r4b.1

Aurora-A in complex with shape-diverse fragment 56

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: L.21, G.22, K.23, G.24, K.25, F.26, G.27, V.29, A.42, K.44, L.76, E.93, A.95, T.99, E.142, N.143, L.145, D.156 Ligands: MG.2, MG.3 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:K.25, A:F.26, A:G.27, A:E.93, A:A.95, A:D.156, A:D.156 Water bridges: A:K.23, A:K.44, A:T.99, A:E.142, A:N.143, A:N.143, A:D.156 Salt bridges: A:K.44, A:K.44

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.143, D.156 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, H2O.1, H2O.2 MG.3: 2 residues within 4Å: Chain A: D.156 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, H2O.1, H2O.1

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: S.166, R.168 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: R.137, R.167, R.168, T.169 Ligand excluded by PLIP CL.6: 3 residues within 4Å: Chain A: M.255, L.256, R.257 Ligand excluded by PLIP CL.7: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP

1 x JSN: (6~{S})-6-[2,4-bis(fluoranyl)phenyl]-~{N},~{N},4-trimethyl-2-oxidanylidene-5,6-dihydro-1~{H}-pyrimidine-5-carboxamide(Non-covalent)

JSN.8: 7 residues within 4Å: Chain A: K.48, E.57, L.60, R.61, Y.81, H.83, V.88 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., Construction of a Shape-Diverse Fragment Set: Design, Synthesis and Screen against Aurora-A Kinase. Chemistry (2019)

Release Date

2019-05-08

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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