SMTL ID : 6r4d.1

Aurora-A in complex with shape-diverse fragment 58

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.01 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 19 residues within 4Å: Chain A: L.21, G.22, K.23, G.24, K.25, F.26, V.29, A.42, K.44, L.76, E.93, A.95, T.99, E.142, N.143, L.145, D.156 Ligands: MG.2, MG.3 15 PLIP interactions: 15 interactions with chain A Hydrogen bonds: A:K.25, A:F.26, A:E.93, A:A.95 Water bridges: A:K.23, A:K.23, A:F.26, A:T.99, A:E.142, A:E.142, A:N.143, A:D.156, A:D.156 Salt bridges: A:K.44, A:K.44

2 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: N.143, D.156 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, H2O.3, H2O.4 MG.3: 3 residues within 4Å: Chain A: K.44, D.156 Ligands: ADP.1 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.156, H2O.1, H2O.4

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: R.61, Y.81 Ligand excluded by PLIP

1 x JRW: (1~{S},10~{S})-12-cyclobutyl-5-methyl-1-oxidanyl-10-propan-2-yl-9,12-diazatricyclo[8.2.1.0^{2,7}]trideca-2(7),3,5-trien-11-one(Non-covalent)

JRW.5: 9 residues within 4Å: Chain A: K.48, E.52, E.57, L.60, R.61, V.64, Y.81, H.83, V.88 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.48, A:E.52, A:L.60, A:R.61, A:V.64, A:Y.81, A:V.88, A:V.88 Hydrogen bonds: A:K.48, A:R.61, A:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zhang, R. et al., Construction of a Shape-Diverse Fragment Set: Design, Synthesis and Screen against Aurora-A Kinase. Chemistry (2019)

Release Date

2019-05-08

Peptides

Aurora kinase A: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Aurora kinase A

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