SMTL ID : 6raz.1

D. melanogaster CMG-DNA, State 2B

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-1-1-1-1-1-1-1-mer

Ligands

1 x DG- DC: DNA(Non-functional Binders)

DG-DC.1: 2 residues within 4Å: Chain A: C.1, G.2 No protein-ligand interaction detected (PLIP)

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Covalent)

ADP.2: 14 residues within 4Å: Chain G: E.590, R.641, V.741, R.742 Chain H: P.380, G.381, T.382, A.383, K.384, S.385, Q.386, N.486, L.529, H.532 12 PLIP interactions: 8 interactions with chain H, 4 interactions with chain G Hydrogen bonds: H:G.381, H:A.383, H:K.384, H:S.385, H:Q.386, H:N.486, H:N.486, G:R.641 Salt bridges: H:K.384, G:R.641, G:R.742, G:R.742 ADP.3: 10 residues within 4Å: Chain G: I.470, H.473, P.510, G.511, T.512, K.514, S.515, Q.516 Chain I: V.610, R.611 6 PLIP interactions: 4 interactions with chain G, 2 interactions with chain I Hydrogen bonds: G:G.511, G:S.515, G:Q.516 Salt bridges: G:K.514, I:R.611, I:R.611

4 x ATP: ADENOSINE-5'-TRIPHOSPHATE(Covalent)(Non-covalent)

ATP.4: 14 residues within 4Å: Chain I: I.350, Y.351, G.352, P.390, S.391, T.392, A.393, K.394, S.395, Q.396, K.543 Chain K: H.590, P.733, R.734 11 PLIP interactions: 8 interactions with chain I, 3 interactions with chain K Hydrogen bonds: I:Y.351, I:S.391, I:A.393, I:K.394, I:S.395, I:Q.396 Salt bridges: I:K.394, I:K.394, K:R.734, K:R.734, K:R.734 ATP.5: 11 residues within 4Å: Chain H: R.369, H.456, R.510 Chain J: S.301, I.302, S.343, A.345, K.346, S.347, Q.348, D.404 12 PLIP interactions: 10 interactions with chain J, 2 interactions with chain H Hydrogen bonds: J:S.343, J:A.345, J:K.346, J:S.347, J:S.347, J:Q.348, J:Q.348, J:D.404, H:R.369 Salt bridges: J:K.346, J:K.346, H:R.510 ATP.6: 15 residues within 4Å: Chain K: I.472, E.474, P.514, G.515, T.516, S.517, K.518, S.519, Q.520, E.577, A.618, L.664 Chain L: R.514, A.603, R.604 12 PLIP interactions: 3 interactions with chain L, 9 interactions with chain K Hydrogen bonds: L:R.604, K:S.517, K:K.518, K:S.519, K:S.519, K:S.519, K:Q.520, K:E.577 Salt bridges: L:R.514, L:R.604, K:K.518, K:K.518 ATP.7: 17 residues within 4Å: Chain J: E.422, R.473, R.610 Chain L: E.343, I.344, G.381, D.382, P.383, G.384, V.385, A.386, K.387, S.388, Q.389, R.532, L.533, I.537 11 PLIP interactions: 8 interactions with chain L, 3 interactions with chain J Hydrogen bonds: L:G.384, L:A.386, L:K.387, L:S.388, L:S.388, L:R.532, J:E.422, J:R.473 Salt bridges: L:K.387, L:K.387, J:R.610

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Eickhoff, P. et al., Molecular Basis for ATP-Hydrolysis-Driven DNA Translocation by the CMG Helicase of the Eukaryotic Replisome. Cell Rep (2019)

Release Date

2019-09-18

Peptides

CDC45L: B
IP07275p: C
Probable DNA replication complex GINS protein PSF2: D
AT18545p: E
DNA replication complex GINS protein SLD5: F
DNA replication licensing factor Mcm2: G
DNA replication licensing factor Mcm5: H
DNA replication licensing factor Mcm6: I
DNA replication licensing factor Mcm3: J
DNA replication licensing factor MCM4: K
DNA replication licensing factor Mcm7: L

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

B
A

C
H

D
L

E
M

F
N

G
2

H
5

I
6

J
3

K
4

L
7

CDC45L

IP07275p

Probable DNA replication complex GINS protein PSF2

AT18545p

DNA replication complex GINS protein SLD5

DNA replication licensing factor Mcm2

DNA replication licensing factor Mcm5

DNA replication licensing factor Mcm6

DNA replication licensing factor Mcm3

DNA replication licensing factor MCM4

DNA replication licensing factor Mcm7

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