SMTL ID : 6rfx.1

Crystal structure of Eis2 from Mycobacterium abscessus

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-hexamer

Ligands

6 x CIT: CITRIC ACID(Non-functional Binders)

CIT.1: 9 residues within 4Å: Chain A: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 9 PLIP interactions: 9 interactions with chain A Hydrogen bonds: A:R.91, A:R.92, A:G.93, A:L.94, A:L.95, A:T.96, A:R.126 Salt bridges: A:R.90, A:R.126 CIT.4: 9 residues within 4Å: Chain B: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 11 PLIP interactions: 11 interactions with chain B Hydrogen bonds: B:R.91, B:G.93, B:G.93, B:L.94, B:L.95, B:T.96, B:R.126 Water bridges: B:R.92 Salt bridges: B:R.90, B:R.91, B:R.126 CIT.8: 9 residues within 4Å: Chain C: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 8 PLIP interactions: 8 interactions with chain C Hydrogen bonds: C:R.91, C:R.92, C:G.93, C:L.94, C:L.95, C:T.96 Salt bridges: C:R.90, C:R.126 CIT.12: 9 residues within 4Å: Chain D: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 12 PLIP interactions: 12 interactions with chain D Hydrogen bonds: D:R.91, D:R.92, D:G.93, D:G.93, D:L.94, D:L.95, D:T.96, D:T.96, D:R.126 Salt bridges: D:R.90, D:R.91, D:R.126 CIT.15: 9 residues within 4Å: Chain E: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 12 PLIP interactions: 12 interactions with chain E Hydrogen bonds: E:R.91, E:R.92, E:G.93, E:L.94, E:L.95, E:T.96, E:T.96, E:R.126 Water bridges: E:T.96 Salt bridges: E:R.90, E:R.91, E:R.126 CIT.18: 9 residues within 4Å: Chain F: R.90, R.91, R.92, G.93, L.94, L.95, T.96, R.126, F.127 10 PLIP interactions: 10 interactions with chain F Hydrogen bonds: F:R.91, F:R.92, F:G.93, F:L.94, F:L.95, F:T.96, F:T.96, F:R.126 Salt bridges: F:R.90, F:R.91

7 x P4K: polyethylene glycol(Non-covalent)

P4K.2: 6 residues within 4Å: Chain A: M.19, A.22, Y.23, F.26, R.28, F.411 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.28 Water bridges: A:N.38, A:A.82, A:V.83, A:V.83, A:S.119 P4K.5: 6 residues within 4Å: Chain B: M.19, A.22, Y.23, F.26, D.410, F.411 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:D.410 Water bridges: B:A.82, B:V.83 P4K.7: 12 residues within 4Å: Chain A: Q.279, G.371, V.373, S.374, A.396, G.400 Chain B: Q.279, G.371, S.374, A.396, G.400, W.401 4 PLIP interactions: 3 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:Q.279, A:Q.279 Water bridges: B:T.397, B:W.401 P4K.9: 7 residues within 4Å: Chain C: M.19, A.22, Y.23, F.26, A.82, D.410, F.411 1 PLIP interactions: 1 interactions with chain C Water bridges: C:V.83 P4K.11: 12 residues within 4Å: Chain C: Q.279, G.371, V.373, S.374, G.400, W.401, P.402 Chain D: Q.279, G.371, S.374, A.396, G.400 5 PLIP interactions: 3 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:Q.279, C:V.373, D:Q.279 Water bridges: C:L.375, D:L.375 P4K.13: 6 residues within 4Å: Chain D: A.22, Y.23, F.26, T.84, D.410, F.411 3 PLIP interactions: 3 interactions with chain D Water bridges: D:R.28, D:R.28, D:V.83 P4K.16: 8 residues within 4Å: Chain E: M.19, A.22, Y.23, F.26, A.82, T.84, D.410, F.411 2 PLIP interactions: 2 interactions with chain E Water bridges: E:N.38, E:T.81

5 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 5 residues within 4Å: Chain A: S.64, R.65, H.66, T.188, W.191 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:T.188 Hydrogen bonds: A:H.66 Water bridges: A:H.66 Salt bridges: A:H.66 ACT.6: 6 residues within 4Å: Chain B: S.64, R.65, H.66, S.186, T.188, W.191 3 PLIP interactions: 3 interactions with chain B Hydrophobic interactions: B:T.188 Hydrogen bonds: B:H.66 Salt bridges: B:H.66 ACT.10: 6 residues within 4Å: Chain C: S.64, R.65, H.66, S.186, T.188, W.191 4 PLIP interactions: 4 interactions with chain C Hydrophobic interactions: C:T.188 Hydrogen bonds: C:H.66 Water bridges: C:H.66 Salt bridges: C:H.66 ACT.14: 5 residues within 4Å: Chain D: S.64, R.65, H.66, T.188, W.191 3 PLIP interactions: 3 interactions with chain D Hydrophobic interactions: D:T.188 Hydrogen bonds: D:H.66 Salt bridges: D:H.66 ACT.17: 5 residues within 4Å: Chain E: S.64, R.65, H.66, T.188, W.191 3 PLIP interactions: 3 interactions with chain E Hydrophobic interactions: E:T.188 Hydrogen bonds: E:H.66 Salt bridges: E:H.66

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ung, K.L. et al., Crystal structure of the aminoglycosides N-acetyltransferase Eis2 from Mycobacterium abscessus. Febs J. (2019)

Release Date

2019-07-10

Peptides

Eis2: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
D

B
A

C
B

D
C

E
E

F
F

Eis2

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