SMTL ID : 6rkn.1

Human Carbonic Anhydrase II in complex with a fluorinated Benzenesulfonamide.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 0.96 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.99, H.101, E.111, H.124, T.203 Ligands: FBS.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.99, A:H.101, A:H.124

1 x HG: MERCURY (II) ION(Non-covalent)

HG.2: 7 residues within 4Å: Chain A: V.139, Q.140, Q.141, L.208, E.209, C.210 Ligands: BE7.3 2 PLIP interactions: 1 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:C.210, H2O.6

1 x BE7: (4-CARBOXYPHENYL)(CHLORO)MERCURY(Non-covalent)

BE7.3: 6 residues within 4Å: Chain A: Q.140, Q.141, P.142, E.209, C.210 Ligands: HG.2 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Hydrophobic interactions: A:P.142 Metal complexes: A:Q.141, A:C.210, H2O.6

2 x FBS: 4-FLUOROBENZENESULFONAMIDE(Non-covalent)

FBS.4: 12 residues within 4Å: Chain A: Q.97, H.99, H.101, H.124, V.126, F.135, V.147, L.202, T.203, T.204, W.213 Ligands: ZN.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:V.126, A:V.126, A:L.202, A:L.202 Hydrogen bonds: A:T.203, A:T.203 FBS.5: 9 residues within 4Å: Chain A: H.9, W.10, H.15, N.16, H.20, W.21, K.23, D.24, F.25 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:H.20 Hydrogen bonds: A:D.24, A:D.24, A:D.24

2 x BGC: beta-D-glucopyranose(Non-covalent)

BGC.6: 3 residues within 4Å: Chain A: K.44, Q.259, K.261 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:K.44, A:Q.259, A:Q.259, A:K.261 Water bridges: A:Q.259 BGC.7: 7 residues within 4Å: Chain A: D.57, Q.58, A.59, N.182, F.183, D.184, R.186 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:D.57, A:D.57, A:N.182, A:R.186 Water bridges: A:A.59, A:T.60, A:N.182

1 x GLC: alpha-D-glucopyranose(Non-covalent)

GLC.8: 6 residues within 4Å: Chain A: K.163, D.179, F.180, T.181, N.182, F.183 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.163, A:D.179, A:T.181, A:T.181, A:T.181, A:N.182 Salt bridges: A:K.163

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Glockner, S. et al., The Influence of Varying Fluorination Patterns on the Thermodynamics and Kinetics of Benzenesulfonamide Binding to Human Carbonic Anhydrase II. Biomolecules (2020)

Release Date

2020-04-15

Peptides

Carbonic anhydrase 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Carbonic anhydrase 2

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