SMTL ID : 6rll.1

CRYSTAL STRUCTURE OF THE HUMAN PRMT5:MEP50 COMPLEX with JNJ44064146

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.22 Å

Oligo State

hetero-1-1-mer

Ligands

1 x K8H: (2~{R},3~{R},4~{S},5~{R})-2-(4-azanylpyrrolo[2,3-d]pyrimidin-7-yl)-5-(1,8-diazaspiro[4.5]decan-1-ylmethyl)oxolane-3,4-diol(Non-covalent)

K8H.1: 18 residues within 4Å: Chain A: P.322, L.323, L.327, Y.332, F.335, G.373, G.375, E.400, K.401, N.402, S.426, D.427, M.428, E.443, L.444, L.445, E.452, C.457 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:P.322, A:L.323, A:L.327, A:F.335, A:F.335, A:K.401, A:E.443 Hydrogen bonds: A:P.322, A:Y.332, A:G.373, A:G.375, A:K.401, A:D.427, A:M.428, A:L.445 Water bridges: A:K.401 Salt bridges: A:E.443 pi-Cation interactions: A:K.401

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brown, D.G. et al., A chemical probe for the methyl transferase PRMT5 with a novelbinding mode. To Be Published

Release Date

2020-06-03

Peptides

Protein arginine N-methyltransferase 5: A
Methylosome protein 50: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Protein arginine N-methyltransferase 5

Methylosome protein 50

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