SMTL ID : 6rwz.1

Structure of Zika virus NS3 helicase in complex with ADP-BeF3

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

monomer

Ligands

1 x MN: MANGANESE (II) ION(Non-covalent)

MN.1: 4 residues within 4Å: Chain A: T.29, E.114 Ligands: BEF.2, ADP.3 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.29, A:E.114, H2O.3, H2O.4

1 x BEF: BERYLLIUM TRIFLUORIDE ION(Non-covalent)

BEF.2: 9 residues within 4Å: Chain A: P.24, G.25, K.28, E.114, A.145, R.287, R.290 Ligands: MN.1, ADP.3 No protein-ligand interaction detected (PLIP)

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 12 residues within 4Å: Chain A: H.23, P.24, G.25, A.26, G.27, K.28, T.29, R.30, N.158, R.290 Ligands: MN.1, BEF.2 16 PLIP interactions: 16 interactions with chain A Hydrogen bonds: A:G.25, A:G.25, A:G.27, A:K.28, A:T.29, A:R.30, A:R.30, A:N.158, A:R.290 Water bridges: A:N.245, A:R.290 Salt bridges: A:K.28, A:R.290, A:R.290 pi-Cation interactions: A:R.30, A:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, M. et al., Octahedral Trifluoromagnesate, an Anomalous Metal Fluoride Species, Stabilizes the Transition State in a Biological Motor. Acs Catalysis (2021)

Release Date

2020-07-15

Peptides

Non-structural protein 3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 3

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