SMTL ID : 6rxs.1

Crystal structure of CobB Ac3(A76G,Y92A, I131L, V187Y) in complex with H4K16-Acetyl peptide

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

hetero-1-1-mer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 7 residues within 4Å: Chain A: C.130, Q.132, S.133, C.149, C.151, C.152, A.156 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.130, A:C.149, A:C.151, A:C.152

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 9 residues within 4Å: Chain A: V.118, I.119, H.120, G.123, E.124, H.161, L.170, G.171, E.174 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.120 Water bridges: A:V.118 GOL.3: 8 residues within 4Å: Chain A: R.129, P.160, H.161, Y.162, V.163, E.167, M.168, L.170 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.129, A:R.129 Water bridges: A:M.168 GOL.4: 5 residues within 4Å: Chain A: G.166 Chain B: G.3, A.4, K.5, R.6 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Spinck, M. et al., Evolved, Selective Erasers of Distinct Lysine Acylations. Angew.Chem.Int.Ed.Engl. (2020)

Release Date

2020-04-15

Peptides

NAD-dependent protein deacylase: A
Histone H4: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

NAD-dependent protein deacylase

Histone H4

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