SMTL ID : 6ry7.1

Crystal structure of Dfg5 from Chaetomium thermophilum in complex with laminaribiose

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.30 Å

Oligo State

monomer

Ligands

1 x BGC- BGC: beta-D-glucopyranose-(1-3)-beta-D-glucopyranose(Non-covalent)

BGC-BGC.1: 11 residues within 4Å: Chain A: T.68, Y.75, W.77, A.123, S.124, G.126, D.128, D.129, W.182, Q.183, D.319 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:G.126, A:D.129, A:W.182, A:Q.183 Water bridges: A:Q.183, A:D.319, A:D.319

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 3 residues within 4Å: Chain A: D.73, H.385, T.386 5 PLIP interactions: 2 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.73, A:H.385, H2O.4, H2O.12, H2O.13

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.3: 6 residues within 4Å: Chain A: L.156, Q.160, T.213, G.420, D.421, P.422 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.160

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vogt, M.S. et al., Structural base for the transfer of GPI-anchored glycoproteins into fungal cell walls. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-08-12

Peptides

Mannan endo-1,6-alpha-mannosidase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Mannan endo-1,6-alpha-mannosidase

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