SMTL ID : 6rz9.1

Crystal structure of the human cysteinyl leukotriene receptor 2 in complex with ONO-2770372

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

monomer

Ligands

1 x KO5: (2~{S})-8-[[4-[4-(5-fluoranyl-2-methyl-phenyl)butoxy]phenyl]carbonylamino]-4-(4-oxidanyl-4-oxidanylidene-butyl)-2,3-dih ydro-1,4-benzoxazine-2-carboxylic acid(Non-covalent)

KO5.1: 20 residues within 4Å: Chain A: K.21, Y.82, Y.103, Y.107, Y.111, S.153, S.154, L.172, L.174, K.178, L.182, M.185, N.186, I.188, A.189, G.193, R.350, L.354, H.367 Ligands: OLC.14 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:Y.103, A:Y.107, A:L.174, A:L.182, A:M.185, A:N.186, A:A.189, A:R.350, A:L.354 Hydrogen bonds: A:Y.103, A:Y.103, A:Y.103 Water bridges: A:E.173 Salt bridges: A:K.21, A:K.178, A:H.367

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 3 residues within 4Å: Chain A: S.202, Y.205, I.209 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:Y.205, A:I.209

1 x 1PE: PENTAETHYLENE GLYCOL(Non-functional Binders)

1PE.3: 5 residues within 4Å: Chain A: E.216, E.220, N.315, I.318, L.322 No protein-ligand interaction detected (PLIP)

13 x OLC: (2R)-2,3-dihydroxypropyl (9Z)-octadec-9-enoate(Non-covalent)(Non-functional Binders)

OLC.4: 5 residues within 4Å: Chain A: F.20, E.23, F.24, I.27 Ligands: OLC.5 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.24, A:I.27, A:I.27 OLC.5: 6 residues within 4Å: Chain A: F.20, F.24, K.368, I.372, L.376 Ligands: OLC.4 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.372, A:L.376 Hydrogen bonds: A:K.368, A:K.368 OLC.6: 5 residues within 4Å: Chain A: P.76, D.80, L.83, R.84 Ligands: OLC.11 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:P.76 Salt bridges: A:R.84 OLC.7: 3 residues within 4Å: Chain A: G.39, C.382, F.383 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.383 OLC.8: 5 residues within 4Å: Chain A: F.199, T.200, I.203, C.204 Ligands: OLA.18 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.199, A:I.203 OLC.9: 4 residues within 4Å: Chain A: F.198, F.199, S.202 Ligands: OLA.17 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:F.198, A:F.199, A:F.199 OLC.10: 2 residues within 4Å: Chain A: V.37, Y.45 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:Y.45 OLC.11: 4 residues within 4Å: Chain A: D.80, R.84 Ligands: OLC.6, OLA.21 No protein-ligand interaction detected (PLIP) OLC.12: 11 residues within 4Å: Chain A: L.212, E.216, L.322, H.325, R.326, L.329, T.330, I.333, I.337 Ligands: OLA.20, OLA.23 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:L.329, A:I.333, A:I.333, A:I.337 Hydrogen bonds: A:E.216, A:L.322, A:R.326 OLC.13: 3 residues within 4Å: Chain A: Y.205 Ligands: OLC.16, OLA.20 No protein-ligand interaction detected (PLIP) OLC.14: 5 residues within 4Å: Chain A: Y.111, L.149, I.188, V.192 Ligands: KO5.1 6 PLIP interactions: 6 interactions with chain A Hydrophobic interactions: A:Y.111, A:Y.111, A:L.149, A:L.149, A:I.188, A:V.192 OLC.15: 3 residues within 4Å: Chain A: I.89, F.90, G.91 No protein-ligand interaction detected (PLIP) OLC.16: 1 residues within 4Å: Ligands: OLC.13 No protein-ligand interaction detected (PLIP)

7 x OLA: OLEIC ACID(Non-covalent)

OLA.17: 6 residues within 4Å: Chain A: Y.187, L.190, V.191, L.196, T.351 Ligands: OLC.9 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:Y.187, A:Y.187, A:L.190, A:V.191, A:T.351 OLA.18: 5 residues within 4Å: Chain A: Y.121, L.196, F.199, L.207 Ligands: OLC.8 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.196, A:F.199, A:L.207 Hydrogen bonds: A:Y.121 OLA.19: 1 residues within 4Å: Chain A: R.210 No protein-ligand interaction detected (PLIP) OLA.20: 7 residues within 4Å: Chain A: Y.205, L.212, L.213, E.216, L.336 Ligands: OLC.12, OLC.13 3 PLIP interactions: 3 interactions with chain A Hydrophobic interactions: A:Y.205, A:L.336 Hydrogen bonds: A:E.216 OLA.21: 3 residues within 4Å: Chain A: L.48, L.69 Ligands: OLC.11 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:L.69 OLA.22: 9 residues within 4Å: Chain A: S.67, L.70, F.71, S.101, N.105, W.140, G.144, W.147, M.151 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:L.70, A:N.105, A:W.140, A:W.147 OLA.23: 3 residues within 4Å: Chain A: T.330, F.390 Ligands: OLC.12 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.390 Hydrogen bonds: A:T.330

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gusach, A. et al., Structural basis of ligand selectivity and disease mutations in cysteinyl leukotriene receptors. Nat Commun (2019)

Release Date

2019-12-11

Peptides

Cysteinyl leukotriene receptor 2,Soluble cytochrome b562,Cysteinyl leukotriene receptor 2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Cysteinyl leukotriene receptor 2,Soluble cytochrome b562,Cysteinyl leukotriene receptor 2

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