6rzp.1 | SWISS-MODEL Template Library

Modelling
Repository
Tools
Documentation
Log in
Create Account

SMTL ID : 6rzp.1

Multicrystal structure of Proteinase K at room temperature using a multilayer monochromator.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

monomer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1:

3 residues within 4Å:

Chain A: S.262, N.263, I.264

2 PLIP interactions:

2 interactions with chain A

Hydrogen bonds: A:N.263
Water bridges: A:L.261

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.2:	3 residues within 4Å: Chain A: P.7, W.8, R.185 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:W.8 Water bridges: A:A.6 Salt bridges: A:R.185
SO4.3:	3 residues within 4Å: Chain A: S.138, S.139, S.140 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:S.138, A:S.138, A:S.139, A:S.140, A:S.140 Water bridges: A:S.139

1 x CA: CALCIUM ION(Non-covalent)

CA.4:

7 residues within 4Å:

Chain A: A.172, E.174, P.175, V.177, T.179, V.198, D.200

4 PLIP interactions:

4 interactions with chain A

Metal complexes: A:E.174, A:V.177, A:T.179, A:D.200

1 x CL: CHLORIDE ION(Non-functional Binders)

CL.5:

2 residues within 4Å:

Chain A: K.57, T.58

Ligand excluded by PLIP

1 x NA: SODIUM ION(Non-functional Binders)

NA.6:

4 residues within 4Å:

Chain A: N.161, G.222, T.223, S.224

6 PLIP interactions:

6 interactions with chain A

Hydrogen bonds: A:N.161, A:N.161, A:T.223, A:S.224
Water bridges: A:S.224, A:S.224

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Mikolajek, H. et al., Protein-to-structure pipeline for ambient-temperature crystallography at VMXi. Iucrj (2023)

Release Date

2019-07-17

Peptides

Proteinase K: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Export Alignment

Secondary Structure
NoneDSSPPSIPREDSSpro

Colour Scheme

Fade MismatchesEnhance Mismatches

ChainUnique ChainRainbow2° StructureBfactorBfactor RangeSOAEntropyClustalHydrophobicSizeChargedPolarProlineSer/ThrCysteineAliphaticAromaticNo Colour

Background

3D Viewer
NGLPV2D

Proteinase K

Related Entries With Identical Sequence

1ic6.1 | 1p7v.1 | 1p7w.1 | 2dqk.1 | 2duj.1 | 2g4v.1 | 2hd4.1 | 2hpz.1 | 2id8.1 | 2pq2.1 | 2pwa.1 | 2pwb.1 | 2pyz.1 | 2v8b.1 | 3aj8.1 | 3aj9.1 | 3dyb.1 | 3gt3.1 | 3gt4.1 | 3l1k.1 | 3osz.1 | 3q40.1 | 3q5g.1 | 3qmp.1 | 4b5l.1 | 4fon.1 | 4wob.1 | 4woc.1 | 4zar.1 | 5avj.1 more...less...

5avk.1 | 5b1d.1 | 5b1e.1 | 5cw1.1 | 5i9s.1 | 5kxu.1 | 5kxv.1 | 5mjl.1 | 5roc.1 | 5rod.1 | 5roe.1 | 5rof.1 | 5rog.1 | 5roh.1 | 5roi.1 | 5roj.1 | 5rok.1 | 5rol.1 | 5rom.1 | 5ron.1 | 5roo.1 | 5rop.1 | 5roq.1 | 5ror.1 | 5ros.1 | 5rot.1 | 5rou.1 | 5rov.1 | 5row.1 | 5rox.1 | 5roy.1 | 5roz.1 | 5rp0.1 | 5rp1.1 | 5rp2.1 | 5rp3.1 | 5rp4.1 | 5rp5.1 | 5rp6.1 | 5rp7.1 | 5rp8.1 | 5rp9.1 | 5rpa.1 | 5rpb.1 | 5rpc.1 | 5rpd.1 | 5rpe.1 | 5rpf.1 | 5rpg.1 | 5rph.1 | 5rpi.1 | 5rpj.1 | 5rpk.1 | 5rpl.1 | 5rpm.1 | 5rpn.1 | 5rpo.1 | 5rpp.1 | 5rpq.1 | 5rpr.1 | 5rps.1 | 5rpt.1 | 5rpu.1 | 5rpv.1 | 5rpw.1 | 5rpx.1 | 5rpy.1 | 5rpz.1 | 5uvl.1 | 5whw.1 | 5wjg.1 | 5wjh.1 | 5wrc.1 | 6fjs.1 | 6j43.1 | 6k2p.1 | 6k2r.1 | 6k2s.1 | 6k2t.1 | 6k2v.1 | 6k2w.1 | 6k2x.1 | 6law.1 | 6mh6.1 | 6n4u.1 | 6qf1.1 | 6qxv.1 | 6rug.1 | 6ruh.1 | 6ruk.1 | 6run.1 | 6ruw.1 | 6rve.1 | 6rvg.1 | 6txg.1 | 6v8r.1 | 6zet.1 | 6zeu.1 | 6zev.1 | 7a68.1 | 7a9f.1 | 7a9k.1 | 7a9m.1 | 7c0p.1 | 7ln7.1 | 7lpt.1 | 7lpu.1 | 7lpv.1 | 7lq8.1 | 7lq9.1 | 7lqa.1 | 7lqb.1 | 7lqc.1 | 7ltd.1 | 7lti.1 | 7ltv.1 | 7lu0.1 | 7lu1.1 | 7lu2.1 | 7lu3.1 | 7njj.1 | 7nuy.1 | 7nuz.1 | 7s4z.1 | 8e53.1 | 8f05.1 | 8f06.1 | 8f07.1 | 8fyo.1 | 8fyp.1 | 8fyq.1 | 8fyr.1 | 8fys.1 | 8sog.1 | 8sou.1 | 8sov.1 | 8spl.1 | 8sqv.1

Cartoon
Tube
Trace
Lines
Ball+Stick
Licorice
Hyperball
Rope
Surface
Spacefill
Outline
Fog

Background

Transparent

Resolution

Low
Medium
High
Extreme

Swiss Institute of BioinformaticsSIB
Schwede Group
Contact Us
Terms of use
Back to the Top