SMTL ID : 6s0i.1

Crystal structure of Escherichia coli Glyoxalase II with L-Tartrate in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 8 residues within 4Å: Chain A: N.12, H.53, D.57, H.58, D.127, H.165 Ligands: ZN.2, TLA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:D.57, A:H.58, A:D.127, A:H.165, H2O.3 ZN.2: 7 residues within 4Å: Chain A: H.53, H.55, H.58, H.110, D.127 Ligands: ZN.1, TLA.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.53, A:H.55, A:H.110, A:D.127, H2O.3

1 x TLA: L(+)-TARTARIC ACID(Covalent)

TLA.3: 11 residues within 4Å: Chain A: N.12, H.55, D.57, H.58, H.110, D.127, F.138, H.165, Y.167 Ligands: ZN.1, ZN.2 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:N.12, A:H.55, A:Y.167 Water bridges: A:H.55, A:D.57, A:D.57, A:D.57, A:Y.167 Salt bridges: A:H.55, A:H.58, A:H.110, A:H.165

1 x EPE: 4-(2-HYDROXYETHYL)-1-PIPERAZINE ETHANESULFONIC ACID(Non-functional Binders)

EPE.4: 8 residues within 4Å: Chain A: F.130, C.134, R.136, Y.167, S.170, N.171, R.245, K.248 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:R.136, A:R.136 Water bridges: A:K.248 Salt bridges: A:R.245, A:K.248 pi-Cation interactions: A:Y.167

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Skorupskaite, A. et al., Crystal structure of Escherichia coli Glyoxalase II. To Be Published

Release Date

2020-07-15

Peptides

Hydroxyacylglutathione hydrolase GloB: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Hydroxyacylglutathione hydrolase GloB

Related Entries With Identical Sequence