SMTL ID : 6s0j.1

Structure of Zika virus NS3 helicase in complex with ADP-MgF3(H2O)-

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x KQB: trifluoromagnesate monohydrate(Non-covalent)

KQB.1: 12 residues within 4Å: Chain A: P.24, G.25, K.28, T.29, E.114, A.145, G.243, Q.283, R.287, R.290 Ligands: MG.2, ADP.3 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.243, A:R.287, A:R.287, A:R.290, A:R.290

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 5 residues within 4Å: Chain A: T.29, D.113, E.114 Ligands: KQB.1, ADP.3 4 PLIP interactions: 1 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:T.29, H2O.1, H2O.3, H2O.7

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.3: 12 residues within 4Å: Chain A: H.23, G.25, A.26, G.27, K.28, T.29, R.30, N.158, N.245, R.290 Ligands: KQB.1, MG.2 19 PLIP interactions: 19 interactions with chain A Hydrogen bonds: A:G.25, A:G.25, A:A.26, A:G.27, A:K.28, A:T.29, A:R.30, A:R.30, A:N.158, A:N.245, A:R.290 Water bridges: A:R.30, A:E.114, A:G.243 Salt bridges: A:K.28, A:R.290, A:R.290 pi-Cation interactions: A:R.30, A:R.30

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ge, M. et al., Octahedral Trifluoromagnesate, an Anomalous Metal Fluoride Species, Stabilizes the Transition State in a Biological Motor. Acs Catalysis (2021)

Release Date

2020-07-15

Peptides

Genome polyprotein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Genome polyprotein

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