SMTL ID : 6s61.1

Apoferritin from mouse at 1.84 angstrom resolution

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-24-mer

Ligands

6 x FE: FE (III) ION(Non-covalent)

FE.1: 8 residues within 4Å: Chain A: L.170, H.174 Chain E: L.170, H.174 Chain V: L.170, H.174 Chain W: L.170, H.174 No protein-ligand interaction detected (PLIP) FE.3: 8 residues within 4Å: Chain B: L.170, H.174 Chain H: L.170, H.174 Chain O: L.170, H.174 Chain P: L.170, H.174 No protein-ligand interaction detected (PLIP) FE.5: 8 residues within 4Å: Chain C: L.170, H.174 Chain G: L.170, H.174 Chain K: L.170, H.174 Chain T: L.170, H.174 No protein-ligand interaction detected (PLIP) FE.7: 8 residues within 4Å: Chain D: L.170, H.174 Chain F: L.170, H.174 Chain L: L.170, H.174 Chain R: L.170, H.174 No protein-ligand interaction detected (PLIP) FE.13: 8 residues within 4Å: Chain I: L.170, H.174 Chain J: L.170, H.174 Chain M: L.170, H.174 Chain N: L.170, H.174 No protein-ligand interaction detected (PLIP) FE.22: 8 residues within 4Å: Chain Q: L.170, H.174 Chain S: L.170, H.174 Chain U: L.170, H.174 Chain X: L.170, H.174 No protein-ligand interaction detected (PLIP)

24 x ZN: ZINC ION(Non-covalent)

ZN.2: 5 residues within 4Å: Chain A: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.28, A:E.63, A:H.66, H2O.1, H2O.4 ZN.4: 5 residues within 4Å: Chain B: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain B, 2 Ligand-Water interactions Metal complexes: B:E.28, B:E.63, B:H.66, H2O.7, H2O.10 ZN.6: 5 residues within 4Å: Chain C: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain C, 2 Ligand-Water interactions Metal complexes: C:E.28, C:E.63, C:H.66, H2O.13, H2O.16 ZN.8: 5 residues within 4Å: Chain D: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain D, 2 Ligand-Water interactions Metal complexes: D:E.28, D:E.63, D:H.66, H2O.19, H2O.23 ZN.9: 5 residues within 4Å: Chain E: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain E, 2 Ligand-Water interactions Metal complexes: E:E.28, E:E.63, E:H.66, H2O.25, H2O.29 ZN.10: 5 residues within 4Å: Chain F: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain F, 2 Ligand-Water interactions Metal complexes: F:E.28, F:E.63, F:H.66, H2O.32, H2O.35 ZN.11: 5 residues within 4Å: Chain G: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain G, 2 Ligand-Water interactions Metal complexes: G:E.28, G:E.63, G:H.66, H2O.38, H2O.41 ZN.12: 5 residues within 4Å: Chain H: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain H, 2 Ligand-Water interactions Metal complexes: H:E.28, H:E.63, H:H.66, H2O.44, H2O.47 ZN.14: 5 residues within 4Å: Chain I: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain I, 2 Ligand-Water interactions Metal complexes: I:E.28, I:E.63, I:H.66, H2O.50, H2O.53 ZN.15: 5 residues within 4Å: Chain J: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain J, 2 Ligand-Water interactions Metal complexes: J:E.28, J:E.63, J:H.66, H2O.56, H2O.60 ZN.16: 5 residues within 4Å: Chain K: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain K, 2 Ligand-Water interactions Metal complexes: K:E.28, K:E.63, K:H.66, H2O.62, H2O.66 ZN.17: 5 residues within 4Å: Chain L: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain L, 2 Ligand-Water interactions Metal complexes: L:E.28, L:E.63, L:H.66, H2O.69, H2O.72 ZN.18: 5 residues within 4Å: Chain M: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain M, 2 Ligand-Water interactions Metal complexes: M:E.28, M:E.63, M:H.66, H2O.75, H2O.78 ZN.19: 5 residues within 4Å: Chain N: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain N, 2 Ligand-Water interactions Metal complexes: N:E.28, N:E.63, N:H.66, H2O.81, H2O.84 ZN.20: 5 residues within 4Å: Chain O: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain O, 2 Ligand-Water interactions Metal complexes: O:E.28, O:E.63, O:H.66, H2O.87, H2O.90 ZN.21: 5 residues within 4Å: Chain P: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain P, 2 Ligand-Water interactions Metal complexes: P:E.28, P:E.63, P:H.66, H2O.93, H2O.97 ZN.23: 5 residues within 4Å: Chain Q: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain Q, 2 Ligand-Water interactions Metal complexes: Q:E.28, Q:E.63, Q:H.66, H2O.99, H2O.103 ZN.24: 5 residues within 4Å: Chain R: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain R, 2 Ligand-Water interactions Metal complexes: R:E.28, R:E.63, R:H.66, H2O.106, H2O.109 ZN.25: 5 residues within 4Å: Chain S: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain S, 2 Ligand-Water interactions Metal complexes: S:E.28, S:E.63, S:H.66, H2O.112, H2O.115 ZN.26: 5 residues within 4Å: Chain T: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain T, 2 Ligand-Water interactions Metal complexes: T:E.28, T:E.63, T:H.66, H2O.118, H2O.121 ZN.27: 5 residues within 4Å: Chain U: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain U, 2 Ligand-Water interactions Metal complexes: U:E.28, U:E.63, U:H.66, H2O.124, H2O.128 ZN.28: 5 residues within 4Å: Chain V: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain V, 2 Ligand-Water interactions Metal complexes: V:E.28, V:E.63, V:H.66, H2O.130, H2O.134 ZN.29: 5 residues within 4Å: Chain W: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain W, 2 Ligand-Water interactions Metal complexes: W:E.28, W:E.63, W:H.66, H2O.137, H2O.140 ZN.30: 5 residues within 4Å: Chain X: E.28, E.63, H.66, V.111, Q.142 5 PLIP interactions: 3 interactions with chain X, 2 Ligand-Water interactions Metal complexes: X:E.28, X:E.63, X:H.66, H2O.143, H2O.146

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Vonck, J. et al., To be published later. To Be Published

Release Date

2019-07-10

Peptides

Ferritin heavy chain: ABCDEFGHIJKLMNOPQRSTUVWX

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Q
Q

R
R

S
S

T
T

U
U

V
V

W
W

X
X

Ferritin heavy chain

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