SMTL ID : 6s6q.2 (1 other biounit)

Crystal structure of the LRR ectodomain of the plant membrane receptor kinase GASSHO1/SCHENGEN3 from Arabidopsis thaliana in complex with CASPARIAN STRIP INTEGRITY FACTOR 2.

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.95 Å

Oligo State

hetero-1-1-mer

Ligands

2 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.1: 1 residues within 4Å: Chain A: N.215 No protein-ligand interaction detected (PLIP) NAG-NAG-BMA.3: 7 residues within 4Å: Chain A: S.331, D.353, S.355, N.356, H.379 Chain B: V.12, P.15 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:P.15

1 x NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-BMA.2: 3 residues within 4Å: Chain A: N.356, N.380, H.404 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.4: 5 residues within 4Å: Chain A: E.211, A.234, N.235 Chain B: P.7, K.10 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:K.10, B:K.10

8 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 3 residues within 4Å: Chain A: N.64, D.88, F.112 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:F.112 Hydrogen bonds: A:N.64 NAG.6: 2 residues within 4Å: Chain A: S.298, N.321 No protein-ligand interaction detected (PLIP) NAG.7: 3 residues within 4Å: Chain A: N.524, H.548, N.571 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.524, A:N.571 NAG.8: 2 residues within 4Å: Chain A: N.552, E.575 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.552 NAG.9: 2 residues within 4Å: Chain A: V.671, N.695 No protein-ligand interaction detected (PLIP) NAG.10: 2 residues within 4Å: Chain A: N.766, Q.790 No protein-ligand interaction detected (PLIP) NAG.11: 9 residues within 4Å: Chain A: Y.764, S.787, H.788, Y.807, N.809, S.811, F.812, P.827, D.829 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:P.827, A:D.829 Hydrogen bonds: A:Y.764, A:S.787, A:H.788, A:Y.807, A:N.809, A:S.811, A:D.829, A:D.829 NAG.12: 2 residues within 4Å: Chain A: S.103, N.104 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:S.103

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Okuda, S. et al., Molecular mechanism for the recognition of sequence-divergent CIF peptides by the plant receptor kinases GSO1/SGN3 and GSO2. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-01-29

Peptides

LRR receptor-like serine/threonine-protein kinase GSO1: A
Protein CASPARIAN STRIP INTEGRITY FACTOR 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

LRR receptor-like serine/threonine-protein kinase GSO1

Protein CASPARIAN STRIP INTEGRITY FACTOR 2

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