SMTL ID : 6s8h.1

Cryo-EM structure of LptB2FG in complex with LPS

Coordinates
PDB Format
Method
ELECTRON MICROSCOPY
Oligo State
hetero-2-1-1-mer
Ligands
2 x LMN: Lauryl Maltose Neopentyl Glycol(Non-covalent)(Covalent)
1 x JSG: (2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-2-[(2~{R},4~{R},5~{R},6~{R})-6-[(1~{R})-1,2-bis(oxidanyl)ethyl]-5-[(2~{S},3~{S},4~{R},5~{R},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-4-[(2~{R},3~{S},4~{R},5~{S},6~{R})-6-[(1~{S})-2-[(2~{S},3~{S},4~{S},5~{S},6~{R})-6-[(1~{S})-1,2-bis(oxidanyl)ethyl]-3,4,5-tris(oxidanyl)oxan-2-yl]oxy-1-oxidanyl-ethyl]-3,4-bis(oxidanyl)-5-phosphonooxy-oxan-2-yl]oxy-3-oxidanyl-5-phosphonooxy-oxan-2-yl]oxy-2-carboxy-2-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-5-[[(3~{R})-3-dodecanoyloxytetradecanoyl]amino]-6-[[(2~{R},3~{S},4~{R},5~{R},6~{R})-3-oxidanyl-5-[[(3~{R})-3-oxidanyltetradecanoyl]amino]-4-[(3~{R})-3-oxidanyltetradecanoyl]oxy-6-phosphonooxy-oxan-2-yl]methoxy]-3-phosphonooxy-4-[(3~{R})-3-tetradecanoyloxytetradecanoyl]oxy-oxan-2-yl]methoxy]oxan-4-yl]oxy-4,5-bis(oxidanyl)oxane-2-carboxylic acid(Non-covalent)
2 x DCQ: 2-decyl-5,6-dimethoxy-3-methylcyclohexa-2,5-diene-1,4-dione(Covalent)(Non-covalent)
2 x LMT: DODECYL-BETA-D-MALTOSIDE(Non-covalent)(Covalent)
Links
RCSB   PDBe   PDBj   PDBsum   CATH   PLIP
Citation
Tang, X. et al., Cryo-EM structures of lipopolysaccharide transporter LptB2FGC in lipopolysaccharide or AMP-PNP-bound states reveal its transport mechanism. Nat Commun (2019)
Release Date
2019-09-25
Peptides
Lipopolysaccharide ABC transporter, ATP-binding protein LptB: AB
Lipopolysaccharide export system permease protein LptF: C
Inner membrane protein yjgQ: D
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
C
F
D
G

Lipopolysaccharide ABC transporter, ATP-binding protein LptB

Lipopolysaccharide export system permease protein LptF

Inner membrane protein yjgQ

Related Entries With Identical Sequence

6mgf.1 | 6s8g.1 | 6s8n.1