SMTL ID : 6s9m.5 (5 other biounits)

Designed Armadillo Repeat protein Lock2 fused to target peptide KRKRKAKITW

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.00 Å

Oligo State

monomer

Ligands

2 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 2 residues within 4Å: Chain A: E.270, Q.273 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.270, A:Q.273 EDO.2: 1 residues within 4Å: Ligands: PG4.4 No protein-ligand interaction detected (PLIP)

2 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 6 residues within 4Å: Chain A: N.78, E.79, G.119, N.120, E.121, Q.122 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.78, A:E.79, A:E.121, A:E.121, A:Q.122 Water bridges: A:N.120, A:Q.164 PG4.4: 7 residues within 4Å: Chain A: G.172, L.174, P.175, A.209, D.212, A.213 Ligands: EDO.2 2 PLIP interactions: 2 interactions with chain A Water bridges: A:G.172, A:A.176

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.5: 5 residues within 4Å: Chain A: F.107, I.110, K.299, I.300, T.301 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:T.301

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ernst, P. et al., Structure-Guided Design of a Peptide Lock for Modular Peptide Binders. Acs Chem.Biol. (2020)

Release Date

2020-02-19

Peptides

Lock2_KRKRKAKITW: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Lock2_KRKRKAKITW

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