SMTL ID : 6slr.2 (1 other biounit)

Structure of saposin B in complex with atovaquone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.38 Å

Oligo State

homo-dimer

Ligands

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: Q.18, R.22, M.66, M.68, Q.69, P.70 Ligands: GOL.2 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:Q.18, A:R.22 GOL.2: 6 residues within 4Å: Chain A: T.15, Q.18, T.19, R.22, P.70 Ligands: GOL.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:T.15, A:R.22, A:R.22 GOL.4: 7 residues within 4Å: Chain B: Q.18, R.22, M.66, M.68, Q.69, P.70 Ligands: GOL.5 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Q.18, B:R.22 GOL.5: 6 residues within 4Å: Chain B: T.15, Q.18, T.19, R.22, P.70 Ligands: GOL.4 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:T.15, B:T.19, B:R.22, B:R.22

2 x AOQ: 2-[trans-4-(4-chlorophenyl)cyclohexyl]-3-hydroxynaphthalene-1,4-dione(Non-covalent)

AOQ.3: 3 residues within 4Å: Chain A: M.68, E.72 Chain B: R.41 No protein-ligand interaction detected (PLIP) AOQ.6: 3 residues within 4Å: Chain A: R.41 Chain B: M.68, E.72 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Zubieta, C. et al., Structure of saposin B in complex with atovaquone. To Be Published

Release Date

2020-09-09

Peptides

Prosaposin: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
B

Prosaposin

Related Entries With Identical Sequence