SMTL ID : 6snc.1 (1 other biounit)

crystal structure of LN01 Fab in complex with an HIV-1 gp41 peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.20 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.1: 2 residues within 4Å: Chain A: S.12, N.107 No protein-ligand interaction detected (PLIP)

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 2 residues within 4Å: Chain B: G.104, F.105 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:F.105 PO4.3: 3 residues within 4Å: Chain B: Y.35, S.56, T.58 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:Y.35, B:S.56, B:T.58

1 x PC: PHOSPHOCHOLINE(Non-covalent)

PC.4: 5 residues within 4Å: Chain A: T.30, K.31, Y.32 Chain B: Y.112 Chain C: W.10 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A pi-Cation interactions: C:W.10 Salt bridges: A:K.31

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Pinto, D. et al., Structural Basis for Broad HIV-1 Neutralization by the MPER-Specific Human Broadly Neutralizing Antibody LN01. Cell Host Microbe (2019)

Release Date

2019-11-06

Peptides

LNO1 Light Chain: A
LNO1 Heavy Chain: B
Envelope glycoprotein gp160: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

LNO1 Light Chain

LNO1 Heavy Chain

Envelope glycoprotein gp160

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