- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x LR2: ~{N}-pyridin-2-yl-2-selanyl-benzamide(Non-covalent)
LR2.2: 6 residues within 4Å:- Chain A: L.106, S.107, G.108, C.111, I.113
- Ligands: LR2.15
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:G.108
LR2.15: 8 residues within 4Å:- Chain A: I.113, I.151
- Chain B: L.106, S.107, G.108, C.111, I.113
- Ligands: LR2.2
4 PLIP interactions:2 interactions with chain A, 2 interactions with chain B- Hydrophobic interactions: A:I.113, A:I.151
- Hydrogen bonds: B:G.108
- Water bridges: B:G.108
- 13 x SO4: SULFATE ION(Non-functional Binders)
SO4.4: 5 residues within 4Å:- Chain A: E.40, G.41, L.42, A.123
- Ligands: SO4.5
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:L.42
- Water bridges: A:L.42, A:A.123
SO4.5: 3 residues within 4Å:- Chain A: K.122, A.123
- Ligands: SO4.4
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:A.123
SO4.6: 3 residues within 4Å:- Chain A: E.40, D.90, K.91
3 PLIP interactions:3 interactions with chain A- Hydrogen bonds: A:E.40, A:D.90, A:K.91
SO4.7: 2 residues within 4Å:- Chain A: L.67, R.69
1 PLIP interactions:1 interactions with chain A- Salt bridges: A:R.69
SO4.8: 1 residues within 4Å:- Chain A: W.32
2 PLIP interactions:2 interactions with chain A- Hydrogen bonds: A:W.32
- Water bridges: A:N.19
SO4.9: 7 residues within 4Å:- Chain A: H.48, H.63, H.120, T.137, G.141, R.143
- Ligands: ZN.3
6 PLIP interactions:6 interactions with chain A- Hydrogen bonds: A:H.63
- Water bridges: A:R.143, A:R.143
- Salt bridges: A:H.48, A:H.120, A:R.143
SO4.17: 5 residues within 4Å:- Chain B: E.40, G.41, L.42, A.123
- Ligands: SO4.21
2 PLIP interactions:2 interactions with chain B- Hydrogen bonds: B:L.42
- Water bridges: B:A.123
SO4.18: 3 residues within 4Å:- Chain B: E.40, D.90, K.91
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:E.40, B:K.91
- Water bridges: B:K.91
- Salt bridges: B:K.91
SO4.19: 2 residues within 4Å:- Chain B: T.39, E.40
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:E.40
SO4.20: 3 residues within 4Å:- Chain B: T.58, S.142, R.143
4 PLIP interactions:4 interactions with chain B- Hydrogen bonds: B:R.143
- Water bridges: B:R.143, B:R.143
- Salt bridges: B:R.143
SO4.21: 3 residues within 4Å:- Chain B: K.122, A.123
- Ligands: SO4.17
1 PLIP interactions:1 interactions with chain B- Hydrogen bonds: B:A.123
SO4.22: 2 residues within 4Å:- Chain B: N.19, W.32
2 PLIP interactions:2 interactions with chain B- Water bridges: B:N.19, B:N.19
SO4.23: 8 residues within 4Å:- Chain B: H.48, H.63, H.120, T.137, G.141, R.143
- Ligands: ZN.16, DMS.25
14 PLIP interactions:14 interactions with chain B- Hydrogen bonds: B:T.137
- Water bridges: B:H.46, B:H.63, B:G.141, B:R.143, B:R.143, B:R.143, B:R.143, B:R.143, B:R.143
- Salt bridges: B:H.48, B:H.63, B:H.120, B:R.143
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
DMS.11: 3 residues within 4Å:- Chain A: T.58, S.142, R.143
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:R.143
DMS.12: 2 residues within 4Å:- Chain A: T.39, E.40
1 PLIP interactions:1 interactions with chain A- Hydrogen bonds: A:E.40
DMS.25: 6 residues within 4Å:- Chain B: E.133, T.137, N.139, A.140, G.141
- Ligands: SO4.23
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:T.137, B:N.139, B:A.140, B:G.141
- Salt bridges: B:E.133
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chantadul, V. et al., Ebselen as template for stabilization of A4V mutant dimer for motor neuron disease therapy. Commun Biol (2020)
- Release Date
- 2020-03-18
- Peptides
- Superoxide dismutase [Cu-Zn]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.97 Å
- Oligo State
- homo-dimer
- Ligands
- 4 x ZN: ZINC ION(Non-covalent)
- 2 x LR2: ~{N}-pyridin-2-yl-2-selanyl-benzamide(Non-covalent)
- 13 x SO4: SULFATE ION(Non-functional Binders)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 3 x DMS: DIMETHYL SULFOXIDE(Non-functional Binders)
- 2 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Chantadul, V. et al., Ebselen as template for stabilization of A4V mutant dimer for motor neuron disease therapy. Commun Biol (2020)
- Release Date
- 2020-03-18
- Peptides
- Superoxide dismutase [Cu-Zn]: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
B