SMTL ID : 6swx.1

Leishmania major methionyl-tRNA synthetase in complex with an allosteric inhibitor

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x LWN: methyl 2-[[6-[[3,4-bis(fluoranyl)phenyl]amino]-1-methyl-pyrazolo[3,4-d]pyrimidin-4-yl]amino]ethanoate(Non-covalent)

LWN.1: 15 residues within 4Å: Chain A: Y.145, E.154, S.155, F.156, F.231, D.232, L.233, S.234, Y.258, W.260, L.261, L.264, F.307, Y.311, F.315 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:F.156, A:F.231, A:L.233, A:W.260, A:Y.311, A:Y.311 Hydrogen bonds: A:F.156, A:S.234, A:S.234 pi-Stacking: A:F.156, A:Y.258

1 x MET: METHIONINE(Non-covalent)

MET.2: 11 residues within 4Å: Chain A: P.33, I.34, Y.36, D.73, W.260, A.263, L.264, N.266, Y.267, I.304, H.308 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:W.260, A:I.304 Hydrogen bonds: A:Y.36, A:D.73 Water bridges: A:D.303

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Torrie, L.S. et al., Discovery of an Allosteric Binding Site in Kinetoplastid Methionyl-tRNA Synthetase. Acs Infect Dis. (2020)

Release Date

2020-08-05

Peptides

Putative methionyl-tRNA synthetase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Putative methionyl-tRNA synthetase

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