SMTL ID : 6szg.1

Acinetobacter baumannii undecaprenyl pyrophosphate synthase (AB-UppS) in complex with GR839 and GSK513

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.84 Å

Oligo State

homo-dimer

Ligands

1 x M2K: 4,5,6,7-tetrahydro-2~{H}-indazole-3-carboxylic acid(Non-covalent)

M2K.1: 11 residues within 4Å: Chain A: M.37, D.38, G.39, N.40, N.41, H.55, A.81, N.86, R.89, L.97 Ligands: M2E.2 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.97 Hydrogen bonds: A:D.38, A:G.39, A:N.40, A:N.41 Water bridges: A:N.41, A:N.41, A:R.42 Salt bridges: A:H.55, A:R.89 pi-Stacking: A:H.55

1 x M2E: (4-chlorophenyl)-[(3~{S})-3-oxidanylpiperidin-1-yl]methanone(Non-covalent)

M2E.2: 12 residues within 4Å: Chain A: M.37, K.59, L.62, A.81, L.97, L.100, L.101, T.104, Q.108, L.151, I.153 Ligands: M2K.1 8 PLIP interactions: 8 interactions with chain A Hydrophobic interactions: A:L.62, A:L.62, A:L.100, A:L.101, A:L.101, A:T.104, A:I.153 Water bridges: A:N.40

1 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain B: D.180, D.182 4 PLIP interactions: 3 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:D.180, B:D.180, B:D.182, H2O.3

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thorpe, J.H. et al., Cocktailed fragment screening by X-ray crystallography of the antibacterial target undecaprenyl pyrophosphate synthase from Acinetobacter baumannii. Acta Crystallogr.,Sect.F (2020)

Release Date

2020-01-22

Peptides

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific): AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Ditrans,polycis-undecaprenyl-diphosphate synthase ((2E,6E)-farnesyl-diphosphate specific)

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