SMTL ID : 6t4j.1

ROR(gamma)t ligand binding domain in complex with desmosterol and allosteric ligand FM26

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

monomer

Ligands

1 x MHQ: desmosterol(Non-covalent)

MHQ.1: 13 residues within 4Å: Chain A: Q.42, C.76, H.79, V.117, R.120, M.121, F.134, F.144, L.152, H.235, L.239, F.242 Ligands: GOL.3 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:H.79, A:M.121, A:F.134, A:F.144, A:L.152, A:L.239, A:F.242 Hydrogen bonds: A:Q.42 Water bridges: A:R.120, A:R.123

1 x L3E: 4-[(~{E})-[3-[2-chloranyl-6-(trifluoromethyl)phenyl]-5-(1~{H}-pyrrol-3-yl)-1,2-oxazol-4-yl]methylideneamino]benzoic acid(Non-covalent)

L3E.2: 22 residues within 4Å: Chain A: W.73, A.77, L.80, T.81, I.84, Q.85, L.109, K.110, A.113, M.114, V.236, L.239, Q.240, Q.243, Q.251, A.252, A.253, F.254, L.257, Y.258, L.261, F.262 16 PLIP interactions: 16 interactions with chain A Hydrophobic interactions: A:W.73, A:T.81, A:I.84, A:Q.85, A:M.114, A:Y.258, A:L.261, A:F.262, A:F.262, A:F.262 Hydrogen bonds: A:Q.85, A:L.109, A:A.253, A:F.254, A:Y.258 Halogen bonds: A:V.236

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.79, F.133, F.134, E.135 Ligands: MHQ.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.133, A:E.135 Water bridges: A:Q.42

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.M.J.M. et al., Cooperativity between the orthosteric and allosteric ligand binding sites of ROR gamma t. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-11-18

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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