SMTL ID : 6tlq.1

ROR(gamma)t ligand binding domain in complex with cholesterol and allosteric ligand Glenmark

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.76 Å

Oligo State

monomer

Ligands

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.1: 15 residues within 4Å: Chain A: Q.42, C.76, H.79, L.80, V.117, R.120, M.121, F.134, F.144, L.147, L.152, H.235, L.239, F.242 Ligands: GOL.3 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:H.79, A:L.80, A:R.120, A:M.121, A:F.134, A:F.144, A:L.147, A:L.152, A:L.239, A:F.242 Water bridges: A:Q.42, A:R.120

1 x MJE: 4-[1-[2,6-bis(chloranyl)phenyl]carbonyl-5-methyl-thieno[3,2-c]pyrazol-3-yl]benzoic acid(Non-covalent)

MJE.2: 21 residues within 4Å: Chain A: W.73, A.77, L.80, T.81, I.84, Q.85, L.109, K.110, M.114, V.236, L.239, Q.240, V.250, Q.251, A.252, A.253, F.254, L.257, Y.258, L.261, F.262 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:W.73, A:T.81, A:I.84, A:L.239, A:V.250, A:L.257, A:L.261, A:F.262, A:F.262 Hydrogen bonds: A:Q.85, A:A.253, A:F.254, A:Y.258

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 5 residues within 4Å: Chain A: H.79, F.133, F.134, E.135 Ligands: CLR.1 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:F.133, A:E.135 Water bridges: A:G.136 GOL.4: 2 residues within 4Å: Chain A: C.101, Q.102 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:Q.102 Water bridges: A:M.98, A:Q.105 GOL.5: 3 residues within 4Å: Chain A: L.49, R.52, H.167 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.52, A:R.52 Water bridges: A:Y.125

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

de Vries, R.M.J.M. et al., Cooperativity between the orthosteric and allosteric ligand binding sites of ROR gamma t. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2020-12-16

Peptides

Nuclear receptor ROR-gamma: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Nuclear receptor ROR-gamma

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