SMTL ID : 6t58.1 (1 other biounit)

Structure determination of the transactivation domain of p53 in complex with S100A4 using annexin A2 as a crystallization chaperone

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 6 residues within 4Å: Chain A: C.347, R.349, T.350, R.393, L.473, K.480 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.393, A:K.480, A:K.480 GOL.2: 7 residues within 4Å: Chain A: P.320, D.324, R.349, E.353, I.357, S.508, V.512 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.349, A:S.508

10 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: D.112, N.114, D.116, E.118, E.123 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:D.116, A:D.116, A:E.118, A:E.123 CA.4: 5 residues within 4Å: Chain A: G.416, R.419, K.420, G.421, E.461 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.416, A:R.419, A:G.421, A:E.461, A:E.461 CA.5: 3 residues within 4Å: Chain A: G.264, V.265, E.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.264, A:V.265, A:E.267, A:E.267 CA.6: 5 residues within 4Å: Chain A: M.332, G.334, L.335, G.336, D.376 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:M.332, A:G.334, A:G.336, A:D.376 CA.7: 8 residues within 4Å: Chain A: L.209, D.210, S.211, N.212, R.213, D.214, E.216, E.221 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:D.210, A:E.221 CA.8: 2 residues within 4Å: Chain A: T.337, E.339 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:T.337, A:E.339, A:E.339 CA.9: 7 residues within 4Å: Chain A: S.167, E.170, G.171, D.172, K.175, N.177, E.180 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:E.170, A:D.172, A:K.175, A:E.180 CA.10: 4 residues within 4Å: Chain A: M.492, G.494, G.496, D.536 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:M.492, A:G.494, A:G.496, A:D.536, A:D.536 CA.11: 3 residues within 4Å: Chain A: K.302, L.305, E.310 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:K.302, A:L.305, A:E.310 CA.12: 5 residues within 4Å: Chain A: S.69, E.72, D.74, K.77, E.82 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.72, A:D.74, A:K.77, A:E.82, A:E.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ecsedi, P. et al., Structure Determination of the Transactivation Domain of p53 in Complex with S100A4 Using Annexin A2 as a Crystallization Chaperone. Structure (2020)

Release Date

2020-05-27

Peptides

Cellular tumor antigen p53,Protein S100-A4,Protein S100-A4,Annexin A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Cellular tumor antigen p53,Protein S100-A4,Protein S100-A4,Annexin A2

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