SMTL ID : 6t58.2 (1 other biounit)

Structure determination of the transactivation domain of p53 in complex with S100A4 using annexin A2 as a crystallization chaperone

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.10 Å

Oligo State

monomer

Ligands

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.320, D.324, R.349, E.353, S.508, R.509, V.512 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.509 GOL.2: 9 residues within 4Å: Chain A: C.347, S.348, R.349, T.350, N.351, R.393, V.436, L.473, K.480 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.351, A:K.480

6 x CA: CALCIUM ION(Non-covalent)

CA.3: 5 residues within 4Å: Chain A: M.492, G.494, G.496, T.497, D.536 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:G.496, A:T.497, A:D.536 CA.4: 5 residues within 4Å: Chain A: M.332, G.334, L.335, G.336, D.376 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.334, A:G.336, A:D.376, A:D.376 CA.5: 2 residues within 4Å: Chain A: R.445, S.448 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:S.448 CA.6: 5 residues within 4Å: Chain A: G.416, V.417, R.419, G.421, E.461 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:G.416, A:R.419, A:G.421, A:E.461, A:E.461 CA.7: 3 residues within 4Å: Chain A: G.264, V.265, E.267 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:G.264, A:V.265, A:E.267, A:E.267 CA.8: 3 residues within 4Å: Chain A: K.302, L.305, E.310 2 PLIP interactions: 2 interactions with chain A Metal complexes: A:K.302, A:L.305

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ecsedi, P. et al., Structure Determination of the Transactivation Domain of p53 in Complex with S100A4 Using Annexin A2 as a Crystallization Chaperone. Structure (2020)

Release Date

2020-05-27

Peptides

Cellular tumor antigen p53,Protein S100-A4,Protein S100-A4,Annexin A2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Cellular tumor antigen p53,Protein S100-A4,Protein S100-A4,Annexin A2

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