SMTL ID : 6t85.1

Urocanate reductase in complex with ADP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.10 Å

Oligo State

monomer

Ligands

1 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 31 residues within 4Å: Chain A: I.10, G.11, S.12, G.13, G.14, A.15, G.16, I.33, E.34, K.35, M.36, G.40, G.41, N.42, S.43, T.155, K.156, A.157, A.191, T.192, G.193, H.218, G.220, G.221, T.222, D.224, M.228, G.421, E.422, V.423, I.441 20 PLIP interactions: 20 interactions with chain A Hydrogen bonds: A:S.12, A:G.13, A:A.15, A:E.34, A:K.35, A:K.35, A:N.42, A:S.43, A:S.43, A:A.157, A:A.157, A:G.193, A:G.220, A:D.224, A:E.422 Water bridges: A:G.16, A:G.41, A:N.42, A:G.194, A:V.423

5 x CL: CHLORIDE ION(Non-functional Binders)

CL.2: 7 residues within 4Å: Chain A: F.117, G.118, Y.245, R.262, F.263, R.283, G.434 Ligand excluded by PLIP CL.3: 5 residues within 4Å: Chain A: R.283, H.393, R.432, A.437 Ligands: GOL.7 Ligand excluded by PLIP CL.4: 4 residues within 4Å: Chain A: H.316, Q.317, G.318, E.319 Ligand excluded by PLIP CL.5: 4 residues within 4Å: Chain A: N.238, M.239, G.240, Y.241 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain A: S.66, K.67 Ligand excluded by PLIP

3 x GOL: GLYCEROL(Non-functional Binders)

GOL.7: 11 residues within 4Å: Chain A: S.46, G.47, A.48, E.49, F.117, L.257, R.283, G.434, G.435, Y.438 Ligands: CL.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:S.46, A:G.47, A:A.48, A:E.49, A:E.49, A:R.283, A:G.435 Water bridges: A:E.49, A:N.436, A:A.437, A:A.437 GOL.8: 2 residues within 4Å: Chain A: N.308, V.309 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.308, A:N.308 GOL.9: 5 residues within 4Å: Chain A: E.22, A.25, W.100, Y.104, R.446 6 PLIP interactions: 6 interactions with chain A Hydrogen bonds: A:E.22, A:W.100, A:R.446 Water bridges: A:Y.104, A:R.446, A:Q.450

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Venskutonyte, R. et al., Structural characterization of the microbial enzyme urocanate reductase mediating imidazole propionate production. Nat Commun (2021)

Release Date

2021-03-03

Peptides

Urocanate reductase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Urocanate reductase

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