SMTL ID : 6tf6.1

Human galectin-3c in complex with a galactose derivative

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 3 residues within 4Å: Chain A: V.113, K.114, K.115 Ligand excluded by PLIP CL.2: 2 residues within 4Å: Chain A: S.134, Y.135 Ligand excluded by PLIP

1 x N62: ~{N}-[[(2~{S},3~{S},4~{R},5~{S},6~{R})-4-[[5,6-bis(fluoranyl)-2-oxidanylidene-chromen-3-yl]methoxy]-6-(hydroxymethyl)-3,5-bis(oxidanyl)oxan-2-yl]methyl]-4-fluoranyl-naphthalene-1-carboxamide(Non-covalent)

N62.3: 13 residues within 4Å: Chain A: R.32, I.33, A.34, H.46, N.48, R.50, N.52, E.53, N.62, W.69, E.72, S.125, G.126 10 PLIP interactions: 10 interactions with chain A Hydrophobic interactions: A:R.50 Hydrogen bonds: A:H.46, A:R.50, A:R.50, A:N.62 Water bridges: A:N.48 Salt bridges: A:R.32 pi-Cation interactions: A:R.32, A:R.50 Halogen bonds: A:N.48

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dahlqvist, A. et al., 3-Substituted 1-Naphthamidomethyl-C-galactosyls Interact with Two Unique Sub-sites for High-Affinity and High-Selectivity Inhibition of Galectin-3. Molecules (2019)

Release Date

2020-11-18

Peptides

Galectin-3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Galectin-3

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