- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
NAP.2: 22 residues within 4Å:- Chain A: N.97, T.102, A.127, T.129, G.130, P.131, V.132, G.133, G.151, R.152, K.156, A.196, G.197, A.198, I.199, L.201, Y.221, N.222, A.249, G.253, K.256
- Ligands: H4M.1
19 PLIP interactions:19 interactions with chain A- Hydrophobic interactions: A:T.102
- Hydrogen bonds: A:N.97, A:T.129, A:V.132, A:G.133, A:R.152, A:K.156, A:G.197, A:A.198, A:Y.221
- Water bridges: A:R.152, A:R.152, A:K.153, A:K.153, A:R.183
- Salt bridges: A:R.152, A:K.156
- pi-Cation interactions: A:R.152, A:R.152
NAP.4: 21 residues within 4Å:- Chain B: N.97, T.102, A.127, T.129, G.130, P.131, V.132, G.151, R.152, K.153, K.156, A.196, G.197, A.198, I.199, L.201, L.203, Y.221, N.222, K.256
- Ligands: H4M.5
31 PLIP interactions:31 interactions with chain B- Hydrophobic interactions: B:T.102
- Hydrogen bonds: B:T.129, B:T.129, B:V.132, B:R.152, B:K.156, B:G.197, B:A.198
- Water bridges: B:N.97, B:N.97, B:N.97, B:N.97, B:A.127, B:T.129, B:G.133, B:R.152, B:K.153, B:K.153, B:R.183, B:I.199, B:Y.221, B:Y.221, B:A.223, B:A.249, B:A.249, B:G.253
- Salt bridges: B:R.152, B:K.153, B:K.156
- pi-Cation interactions: B:R.152, B:R.152
NAP.6: 19 residues within 4Å:- Chain C: N.97, T.102, A.127, T.129, G.130, P.131, V.132, G.151, R.152, K.156, A.196, G.197, A.198, I.199, L.201, Y.221, N.222, K.256
- Ligands: H4M.7
24 PLIP interactions:24 interactions with chain C- Hydrogen bonds: C:T.102, C:T.129, C:V.132, C:R.152, C:K.156, C:G.197, C:A.198
- Water bridges: C:N.97, C:N.97, C:N.97, C:T.129, C:G.133, C:R.152, C:R.152, C:K.153, C:K.153, C:K.153, C:K.153, C:R.183, C:A.223
- Salt bridges: C:R.152, C:K.156
- pi-Cation interactions: C:R.152, C:R.152
- 1 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 10 residues within 4Å:- Chain A: Y.24, H.30, I.31
- Chain B: Y.24, D.29, H.30, I.31
- Chain C: Y.24, H.30, I.31
8 PLIP interactions:3 interactions with chain C, 3 interactions with chain A, 2 interactions with chain B- Hydrogen bonds: C:Y.24, C:I.31, A:Y.24, A:I.31, B:Y.24
- Salt bridges: C:H.30, A:H.30, B:H.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. J.Mol.Biol. (2020)
- Release Date
- 2020-02-26
- Peptides
- Bifunctional NADP-dependent methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. J.Mol.Biol. (2020)
- Release Date
- 2020-02-26
- Peptides
- Bifunctional NADP-dependent methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
DB
EC
F