- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 3 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
H4M.2: 17 residues within 4Å:- Chain A: S.16, F.18, D.19, N.97, G.98, T.102, A.223, L.250, G.253, K.256, L.257
- Chain C: Y.51, G.54, G.55, K.58, P.87
- Ligands: NAP.1
18 PLIP interactions:6 interactions with chain C, 12 interactions with chain A- Hydrophobic interactions: C:Y.51, C:Y.51, C:Y.51, A:A.223, A:L.257
- Hydrogen bonds: C:Y.51, C:G.55, C:K.58, A:S.16, A:S.16, A:T.102, A:K.256
- Water bridges: A:D.19, A:N.97, A:N.97, A:K.256
- Salt bridges: A:D.19
- pi-Stacking: A:F.18
H4M.5: 16 residues within 4Å:- Chain A: Y.51, G.54, G.55, K.56, E.57
- Chain B: S.16, F.18, D.19, N.97, G.98, L.250, G.253, G.254, K.256, L.257
- Ligands: NAP.4
16 PLIP interactions:11 interactions with chain B, 5 interactions with chain A- Hydrophobic interactions: B:L.257, A:Y.51, A:Y.51
- Hydrogen bonds: B:S.16, B:S.16, B:L.250, B:K.256, B:K.256, A:K.56
- Water bridges: B:N.97, B:A.249, B:G.253, A:G.55
- Salt bridges: B:D.19, A:K.56
- pi-Stacking: B:F.18
H4M.7: 11 residues within 4Å:- Chain B: Y.51, F.85, F.88
- Chain C: S.16, F.18, D.19, N.97, G.98, L.250, K.256
- Ligands: NAP.6
9 PLIP interactions:8 interactions with chain C, 1 interactions with chain B- Hydrophobic interactions: C:F.18, B:Y.51
- Hydrogen bonds: C:S.16, C:S.16, C:N.97
- Water bridges: C:D.19, C:K.256
- Salt bridges: C:D.19
- pi-Stacking: C:F.18
- 1 x SO4: SULFATE ION(Non-functional Binders)
SO4.3: 9 residues within 4Å:- Chain A: Y.24, H.30, I.31
- Chain B: Y.24, D.29, H.30, I.31
- Chain C: Y.24, H.30
10 PLIP interactions:4 interactions with chain B, 2 interactions with chain C, 4 interactions with chain A- Hydrogen bonds: B:Y.24, B:Y.24, B:I.31, C:Y.24, A:Y.24, A:Y.24, A:I.31
- Salt bridges: B:H.30, C:H.30, A:H.30
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. J.Mol.Biol. (2020)
- Release Date
- 2020-02-26
- Peptides
- Bifunctional NADP-dependent methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
WC
X
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.50 Å
- Oligo State
- homo-trimer
- Ligands
- 3 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)
- 3 x H4M: 5,10-DIMETHYLENE TETRAHYDROMETHANOPTERIN(Non-covalent)
- 1 x SO4: SULFATE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Huang, G. et al., The Hydride Transfer Process in NADP-dependent Methylene-tetrahydromethanopterin Dehydrogenase. J.Mol.Biol. (2020)
- Release Date
- 2020-02-26
- Peptides
- Bifunctional NADP-dependent methylenetetrahydromethanopterin dehydrogenase/methylenetetrahydrofolate dehydrogenase: ABC
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
VB
WC
X