SMTL ID : 6tl9.1 (1 other biounit)

CRYSTAL STRUCTURE OF LECTIN-LIKE OX-LDL RECEPTOR 1 IN COMPLEX WITH BI-0115

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-tetramer

Ligands

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain B: S.24 Ligands: NJT.2 No protein-ligand interaction detected (PLIP)

2 x NJT: 9-chloranyl-5-propyl-11~{H}-pyrido[2,3-b][1,4]benzodiazepin-6-one(Non-covalent)

NJT.2: 13 residues within 4Å: Chain B: S.24, S.61, F.62, P.63, A.121 Chain C: P.63, W.65, Y.107, E.116, L.120, A.121 Ligands: GOL.1, NJT.3 8 PLIP interactions: 3 interactions with chain B, 5 interactions with chain C Hydrophobic interactions: B:F.62, B:F.62, C:L.120, C:L.120 Water bridges: B:Q.109 Hydrogen bonds: C:A.121, C:A.121 pi-Stacking: C:Y.107 NJT.3: 12 residues within 4Å: Chain B: P.63, W.65, Y.107, L.120, A.121, A.122 Chain C: S.24, S.61, F.62, P.63, A.121 Ligands: NJT.2 9 PLIP interactions: 5 interactions with chain B, 4 interactions with chain C Hydrophobic interactions: B:L.120, B:A.122, C:F.62, C:F.62, C:P.63 Hydrogen bonds: B:A.121, B:A.121 pi-Stacking: B:Y.107 Water bridges: C:Q.109

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nar, H. et al., A small-molecule inhibitor of lectin-like oxidized LDL receptor-1 acts by stabilizing an inactive receptor tetramer state. Commun Chem (2020)

Release Date

2020-07-22

Peptides

Oxidized low-density lipoprotein receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Oxidized low-density lipoprotein receptor 1

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