SMTL ID : 6tl9.2 (1 other biounit)

CRYSTAL STRUCTURE OF LECTIN-LIKE OX-LDL RECEPTOR 1 IN COMPLEX WITH BI-0115

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

homo-tetramer

Ligands

2 x NJT: 9-chloranyl-5-propyl-11~{H}-pyrido[2,3-b][1,4]benzodiazepin-6-one(Non-covalent)

NJT.1: 12 residues within 4Å: Chain B: S.24, S.61, F.62, P.63, A.121 Chain C: P.63, W.65, Y.107, L.120, A.121, A.122 Ligands: NJT.2 8 PLIP interactions: 5 interactions with chain C, 3 interactions with chain B Hydrophobic interactions: C:P.63, C:L.120, C:A.122, B:F.62 Hydrogen bonds: C:A.121, C:A.121 Water bridges: B:Q.109 pi-Stacking: B:F.62 NJT.2: 13 residues within 4Å: Chain B: P.63, W.65, Y.107, E.116, L.120, A.121, A.122 Chain C: S.24, S.61, F.62, P.63, A.121 Ligands: NJT.1 8 PLIP interactions: 6 interactions with chain B, 2 interactions with chain C Hydrophobic interactions: B:P.63, B:Y.107, B:L.120, B:A.122, C:F.62 Hydrogen bonds: B:A.121, B:A.121 pi-Stacking: C:F.62

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nar, H. et al., A small-molecule inhibitor of lectin-like oxidized LDL receptor-1 acts by stabilizing an inactive receptor tetramer state. Commun Chem (2020)

Release Date

2020-07-22

Peptides

Oxidized low-density lipoprotein receptor 1: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
F

C
G

D
H

Oxidized low-density lipoprotein receptor 1

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