SMTL ID : 6tno.3 (2 other biounits)

Crystal structure of the human Arc N-lobe bound to stargazin

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

monomer

Ligands

1 x ARG- ILE- PRO- SER- TYR- ARG- TYR- ARG: Chains: B,D,F(Non-covalent)

ARG-ILE-PRO-SER-TYR-ARG-TYR-ARG.1: 20 residues within 4Å: Chain A: T.9, Q.10, I.11, F.12, E.13, D.14, P.15, F.18, H.21, L.22, Y.25, N.42, H.43, M.44, N.45, P.47, A.48, F.69, Y.72, S.73 18 PLIP interactions: 18 interactions with chain A Hydrophobic interactions: A:I.11, A:F.12, A:F.18, A:Y.25, A:A.48 Hydrogen bonds: A:Q.10, A:Q.10, A:Q.10, A:F.12, A:F.12, A:H.43, A:H.43, A:N.45, A:N.45 Water bridges: A:E.13 Salt bridges: A:E.13, A:E.13 pi-Stacking: A:F.69

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hallin, E.I. et al., Structural properties and peptide ligand binding of the capsid homology domains of human Arc. Biochem Biophys Rep (2021)

Release Date

2020-12-16

Peptides

Arc_C domain-containing protein: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

Arc_C domain-containing protein

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