SMTL ID : 6tse.1 (1 other biounit)

Crystal Structure of 1-methylindoline-2,3-dione covalently bound to the PH domain of Bruton's tyrosine kinase mutant R28C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.41 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-functional Binders)

MG.1: 0 residues within 4Å: (No contacts) No protein-ligand interaction detected (PLIP)

3 x 72V: 1-methylindole-2,3-dione(Covalent)(Non-covalent)

72V.2: 10 residues within 4Å: Chain A: K.11, F.29, L.36, S.37, Y.38, G.53, S.54, I.55, Y.105, L.110 9 PLIP interactions: 9 interactions with chain A Hydrophobic interactions: A:F.29, A:L.36, A:Y.38, A:I.55, A:I.55, A:L.110 Hydrogen bonds: A:Y.38 pi-Stacking: A:Y.38, A:Y.38 72V.3: 4 residues within 4Å: Chain A: N.23, K.25, K.52 Ligands: 72V.4 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.25 Hydrogen bonds: A:K.52 72V.4: 6 residues within 4Å: Chain A: K.11, S.13, N.23, K.25, Y.38 Ligands: 72V.3 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:K.11, A:N.23, A:K.25 pi-Cation interactions: A:K.25, A:K.25

1 x ZN: ZINC ION(Non-covalent)

ZN.5: 5 residues within 4Å: Chain A: H.142, Y.151, C.153, C.154, C.164 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:C.153, A:C.154, A:C.164

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brear, P. et al., Crystal Structure of 1-methylindoline-2,3-dione covalently bound to the PH domain of Bruton's tyrosine kinase mutant R28C. To Be Published

Release Date

2020-11-25

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Tyrosine-protein kinase BTK

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