SMTL ID : 6yyk.2 (1 other biounit)

Crystal Structure of 1,5-dimethylindoline-2,3-dione covalently bound to the PH domain of Bruton's tyrosine kinase mutant R28C

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.04 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 5 residues within 4Å: Chain A: H.142, Y.151, C.153, C.154, C.164 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:H.142, A:C.153, A:C.154, A:C.164

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 1 residues within 4Å: Chain A: E.6 No protein-ligand interaction detected (PLIP)

1 x IS7: 1,5-dimethyl-3~{H}-indol-2-one(Covalent)

IS7.3: 8 residues within 4Å: Chain A: K.11, S.13, Q.14, L.36, Y.38, S.54, I.55, L.110 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:K.11, A:Y.38, A:Y.38, A:Y.38, A:Y.38, A:I.55, A:I.55, A:L.110, A:L.110 Hydrogen bonds: A:K.11, A:Q.14

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Brear, P. et al., Optimising crystallographic systems for structure-guided drug discovery. To Be Published

Release Date

2021-05-12

Peptides

Tyrosine-protein kinase BTK: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Tyrosine-protein kinase BTK

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