SMTL ID : 6tv3.1

HumRadA1 in complex with 3-amino-2-naphthoic acid

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.50 Å

Oligo State

monomer

Ligands

1 x NYE: 3-azanylnaphthalene-2-carboxylic acid(Non-covalent)

NYE.1: 10 residues within 4Å: Chain A: M.63, W.64, I.65, A.95, Y.96, A.97, L.108, Q.111, A.112, M.115 5 PLIP interactions: 5 interactions with chain A Hydrophobic interactions: A:M.63, A:I.65, A:A.95, A:A.97, A:A.112

1 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.2: 6 residues within 4Å: Chain A: G.35, S.36, G.37, K.38, T.39, Q.40 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.35, A:G.35, A:S.36, A:G.37, A:K.38, A:K.38, A:T.39, A:T.39, A:Q.40 Water bridges: A:T.39, A:R.205

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 8 residues within 4Å: Chain A: S.61, V.62, K.92, H.93, I.94, A.95, M.115, L.119 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:S.61, A:V.62, A:K.92, A:A.95 GOL.4: 3 residues within 4Å: Chain A: E.89, H.93, R.124 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:H.93, A:R.124 Water bridges: A:R.124

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.E. et al., A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death. Cell Chem Biol (2021)

Release Date

2021-01-27

Peptides

DNA repair and recombination protein RadA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair and recombination protein RadA

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