SMTL ID : 6tw3.1

HumRadA2 in complex with Naphthyl-HPA fragment-peptide chimera

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.35 Å

Oligo State

monomer

Ligands

2 x PO4: PHOSPHATE ION(Non-functional Binders)

PO4.1: 7 residues within 4Å: Chain A: E.33, F.34, G.35, S.36, G.37, K.38, T.39 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:G.35, A:S.36, A:G.37, A:K.38, A:T.39, A:T.39 Water bridges: A:G.37, A:K.38, A:K.38, A:Q.40 Salt bridges: A:K.38 PO4.2: 2 residues within 4Å: Chain A: K.201, G.202 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:G.202 Water bridges: A:G.203 Salt bridges: A:K.201

1 x O0E: (2~{S})-1-[(2~{S})-2-[(3-azanylnaphthalen-2-yl)carbonylamino]-3-(1~{H}-imidazol-4-yl)propanoyl]-~{N}-[(2~{S})-1-azanyl-1-oxidanylidene-propan-2-yl]pyrrolidine-2-carboxamide(Non-covalent)

O0E.3: 13 residues within 4Å: Chain A: M.63, W.64, I.65, F.71, P.73, L.91, I.94, A.95, Y.96, A.97, L.108, Q.111, A.112 12 PLIP interactions: 12 interactions with chain A Hydrophobic interactions: A:I.65, A:F.71, A:L.91, A:I.94, A:A.95, A:A.97, A:L.108, A:A.112 Hydrogen bonds: A:I.94, A:Y.96, A:Y.96, A:Q.111

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Scott, D.E. et al., A small-molecule inhibitor of the BRCA2-RAD51 interaction modulates RAD51 assembly and potentiates DNA damage-induced cell death. Cell Chem Biol (2021)

Release Date

2021-01-27

Peptides

DNA repair and recombination protein RadA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA repair and recombination protein RadA

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