SMTL ID : 6u2w.1

EM structure of MPEG-1(L425K) pre-pore complex bound to liposome

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-16-mer

Ligands

32 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain A: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 1 residues within 4Å: Chain B: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain B: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 1 residues within 4Å: Chain C: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 4 residues within 4Å: Chain C: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.7: 1 residues within 4Å: Chain D: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.8: 4 residues within 4Å: Chain D: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.9: 1 residues within 4Å: Chain E: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.10: 4 residues within 4Å: Chain E: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.11: 1 residues within 4Å: Chain F: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.12: 4 residues within 4Å: Chain F: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.13: 1 residues within 4Å: Chain G: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.14: 4 residues within 4Å: Chain G: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.15: 1 residues within 4Å: Chain H: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.16: 4 residues within 4Å: Chain H: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.17: 1 residues within 4Å: Chain I: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.18: 4 residues within 4Å: Chain I: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.19: 1 residues within 4Å: Chain J: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.20: 4 residues within 4Å: Chain J: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.21: 1 residues within 4Å: Chain K: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.22: 4 residues within 4Å: Chain K: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.23: 1 residues within 4Å: Chain L: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.24: 4 residues within 4Å: Chain L: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.25: 1 residues within 4Å: Chain M: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.26: 4 residues within 4Å: Chain M: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.27: 1 residues within 4Å: Chain N: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.28: 4 residues within 4Å: Chain N: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.29: 1 residues within 4Å: Chain O: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.30: 4 residues within 4Å: Chain O: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP) NAG-NAG.31: 1 residues within 4Å: Chain P: N.168 No protein-ligand interaction detected (PLIP) NAG-NAG.32: 4 residues within 4Å: Chain P: F.208, D.211, S.251, N.252 No protein-ligand interaction detected (PLIP)

Links

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Citation

Pang, S.S. et al., The cryo-EM structure of the acid activatable pore-forming immune effector Macrophage-expressed gene 1. Nat Commun (2019)

Release Date

2019-09-25

Peptides

Macrophage-expressed gene 1 protein: ABCDEFGHIJKLMNOP

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

H
H

I
I

J
J

K
K

L
L

M
M

N
N

O
O

P
P

Macrophage-expressed gene 1 protein

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