SMTL ID : 6u38.1

PCSK9 in complex with a Fab and compound 8

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.73 Å

Oligo State

hetero-2-1-1-mer

Ligands

1 x PVJ: 2-fluoro-4-{[(1R)-1-methyl-6-{[(2S)-oxan-2-yl]methoxy}-1-{2-oxo-2-[(1,3-thiazol-2-yl)amino]ethyl}-1,2,3,4-tetrahydroisoquinolin-7-yl]oxy}benzoic acid(Non-covalent)

PVJ.1: 19 residues within 4Å: Chain B: A.298, S.299, A.300, P.301, V.303, T.305, R.327, C.328, V.329, D.330, R.382, R.428, V.430, W.431, I.444, A.445, R.446, C.447, A.448 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:P.301, B:P.301 Hydrogen bonds: B:P.301, B:T.305, B:R.327, B:R.327, B:C.328, B:R.428, B:R.428, B:I.444, B:R.446 Salt bridges: B:R.446 Halogen bonds: B:I.444

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Petrilli, W.L. et al., From Screening to Targeted Degradation: Strategies for the Discovery and Optimization of Small Molecule Ligands for PCSK9. Cell Chem Biol (2020)

Release Date

2019-11-06

Peptides

Proprotein convertase subtilisin/kexin type 9: AB
Fab Heavy Chain: C
Fab Light Chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
H

D
L

Proprotein convertase subtilisin/kexin type 9

Fab Heavy Chain

Fab Light Chain

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