SMTL ID : 6ud2.2 (1 other biounit)

co-crystal structure of compound 1 bound to human Mcl-1

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-dimer

Ligands

2 x Q4D: (4S,7aR,9aR,10S,11E,18R)-6'-chloro-10-[2-(3,3-difluoroazetidin-1-yl)ethoxy]-N-(dimethylsulfamoyl)-18-hydroxy-15-methyl-16-oxo-3',4',7,7a,8,9,9a,10,13,14,15,16,17,18-tetradecahydro-2'H,3H,5H-spiro[1,19-(ethanediylidene)cyclobuta[n][1,4]oxazepino[4,3-a][1,8]diazacyclohexadecine-4,1'-naphthalene]-18-carboxamide(Non-covalent)

Q4D.1: 19 residues within 4Å: Chain A: H.54, A.57, F.58, G.60, M.61, K.64, L.65, V.79, M.80, V.83, F.84, R.93, T.96, L.97, F.100, G.101, L.120, I.124 Ligands: Q4D.2 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:A.57, A:F.58, A:F.58, A:M.61, A:L.65, A:V.79, A:V.83, A:V.83, A:F.84, A:T.96, A:L.97, A:F.100, A:F.100 Hydrogen bonds: A:R.93 pi-Stacking: A:F.100 Q4D.2: 19 residues within 4Å: Chain B: H.54, A.57, F.58, G.60, M.61, K.64, L.65, V.79, M.80, V.83, F.84, R.93, T.96, L.97, F.100, G.101, L.120, I.124 Ligands: Q4D.1 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:A.57, B:F.58, B:F.58, B:M.61, B:L.65, B:V.79, B:V.83, B:V.83, B:F.84, B:T.96, B:L.97, B:F.100, B:F.100 Hydrogen bonds: B:R.93 pi-Stacking: B:F.100

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Rescourio, G. et al., Discovery and in Vivo Evaluation of Macrocyclic Mcl-1 Inhibitors Featuring an alpha-Hydroxy Phenylacetic Acid Pharmacophore or Bioisostere. J.Med.Chem. (2019)

Release Date

2019-12-04

Peptides

Induced myeloid leukemia cell differentiation protein Mcl-1: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Induced myeloid leukemia cell differentiation protein Mcl-1

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