SMTL ID : 6ue6.3 (7 other biounits)

PWWP1 domain of NSD2 in complex with MR837

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

monomer

Ligands

1 x Q5D: 4-cyano-N-cyclopropyl-N-[(thiophen-2-yl)methyl]benzamide(Non-covalent)

Q5D.1: 15 residues within 4Å: Chain A: V.21, Y.24, W.27, F.57, F.58, G.59, D.60, A.61, E.63, R.64, A.65, Q.112 Ligands: UNX.4, UNX.5, UNX.6 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:V.21, A:Y.24, A:Y.24, A:W.27, A:W.27, A:F.57, A:F.57, A:F.57, A:E.63, A:A.65 Hydrogen bonds: A:A.61

5 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 2 residues within 4Å: Chain A: A.65, W.66 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: V.13, S.32, A.33 No protein-ligand interaction detected (PLIP) UNX.4: 4 residues within 4Å: Chain A: A.61, E.63 Ligands: Q5D.1, UNX.5 No protein-ligand interaction detected (PLIP) UNX.5: 3 residues within 4Å: Chain A: E.63 Ligands: Q5D.1, UNX.4 No protein-ligand interaction detected (PLIP) UNX.6: 7 residues within 4Å: Chain A: S.19, K.20, V.21, Y.24, P.25, W.27 Ligands: Q5D.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ferreira de Freitas, R. et al., Discovery of Small-Molecule Antagonists of the PWWP Domain of NSD2. J.Med.Chem. (2021)

Release Date

2019-11-13

Peptides

Histone-lysine N-methyltransferase NSD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
C

Histone-lysine N-methyltransferase NSD2

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