SMTL ID : 6xcg.2 (2 other biounits)

Histone-lysine N-methyltransferase NSD2-PWWP1 with compound UNC6934

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.64 Å

Oligo State

monomer

Ligands

1 x V01: N-cyclopropyl-3-oxo-N-({4-[(pyrimidin-4-yl)carbamoyl]phenyl}methyl)-3,4-dihydro-2H-1,4-benzoxazine-7-carboxamide(Non-covalent)

V01.1: 13 residues within 4Å: Chain A: V.21, Y.24, W.27, F.57, F.58, G.59, D.60, A.61, E.63, R.64, A.65, L.109, Q.112 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:V.21, A:Y.24, A:Y.24, A:Y.24, A:W.27, A:F.57, A:F.57, A:F.57, A:E.63, A:A.65, A:L.109 Hydrogen bonds: A:A.61, A:E.63, A:Q.112 Water bridges: A:E.63, A:R.64, A:R.64

3 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: W.26, S.88 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.3: 3 residues within 4Å: Chain A: I.105, S.106, L.109 No protein-ligand interaction detected (PLIP) UNX.4: 2 residues within 4Å: Chain A: Q.91 Ligands: UNX.2 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dilworth, D. et al., A chemical probe targeting the PWWP domain alters NSD2 nucleolar localization. Nat.Chem.Biol. (2022)

Release Date

2020-07-22

Peptides

Histone-lysine N-methyltransferase NSD2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Histone-lysine N-methyltransferase NSD2

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